Hb_003376_170

Information

Type -
Description -
Location Contig3376: 120909-121761
Sequence    

Annotation

kegg
ID pop:POPTR_0006s13180g
description hypothetical protein
nr
ID XP_012082322.1
description PREDICTED: uncharacterized protein LOC105642198 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JYX2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16486 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003376_170 0.0 - - PREDICTED: uncharacterized protein LOC105642198 isoform X2 [Jatropha curcas]
2 Hb_011525_020 0.1322845202 - - PREDICTED: uncharacterized protein LOC105640903 [Jatropha curcas]
3 Hb_064201_010 0.1336049829 - - hypothetical protein RCOM_1685970 [Ricinus communis]
4 Hb_005217_020 0.1544857678 - - PREDICTED: ribosomal RNA processing protein 36 homolog isoform X2 [Jatropha curcas]
5 Hb_005016_150 0.1720965643 - - -
6 Hb_000352_130 0.1750047779 - - hypothetical protein CISIN_1g0419111mg, partial [Citrus sinensis]
7 Hb_000454_030 0.1774714528 - - -
8 Hb_000331_500 0.1782513124 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
9 Hb_000107_140 0.1793679451 - - -
10 Hb_001675_060 0.1806793137 - - PREDICTED: dynein light chain 1, cytoplasmic-like [Jatropha curcas]
11 Hb_005271_030 0.1902431314 - - copper-transporting atpase p-type, putative [Ricinus communis]
12 Hb_013479_020 0.1913173923 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
13 Hb_144898_010 0.1914918868 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
14 Hb_000256_270 0.1921396458 - - PREDICTED: large proline-rich protein bag6-B isoform X1 [Jatropha curcas]
15 Hb_004607_120 0.1928048489 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 8 [Jatropha curcas]
16 Hb_003226_170 0.1940040563 - - PREDICTED: poly [ADP-ribose] polymerase 2 isoform X1 [Jatropha curcas]
17 Hb_001846_080 0.1959716005 - - PREDICTED: poly(rC)-binding protein 3-like [Nicotiana sylvestris]
18 Hb_001523_010 0.1965829799 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_25496 [Jatropha curcas]
19 Hb_000565_020 0.1967355447 - - PREDICTED: alpha-galactosidase 3 [Jatropha curcas]
20 Hb_004669_040 0.1981449441 - - ATPase inhibitor, putative [Ricinus communis]

Gene co-expression network

sample Hb_003376_170 Hb_003376_170 Hb_011525_020 Hb_011525_020 Hb_003376_170--Hb_011525_020 Hb_064201_010 Hb_064201_010 Hb_003376_170--Hb_064201_010 Hb_005217_020 Hb_005217_020 Hb_003376_170--Hb_005217_020 Hb_005016_150 Hb_005016_150 Hb_003376_170--Hb_005016_150 Hb_000352_130 Hb_000352_130 Hb_003376_170--Hb_000352_130 Hb_000454_030 Hb_000454_030 Hb_003376_170--Hb_000454_030 Hb_011525_020--Hb_005217_020 Hb_001675_060 Hb_001675_060 Hb_011525_020--Hb_001675_060 Hb_004545_050 Hb_004545_050 Hb_011525_020--Hb_004545_050 Hb_000441_230 Hb_000441_230 Hb_011525_020--Hb_000441_230 Hb_003360_020 Hb_003360_020 Hb_011525_020--Hb_003360_020 Hb_001146_070 Hb_001146_070 Hb_064201_010--Hb_001146_070 Hb_005271_030 Hb_005271_030 Hb_064201_010--Hb_005271_030 Hb_000329_620 Hb_000329_620 Hb_064201_010--Hb_000329_620 Hb_064201_010--Hb_000352_130 Hb_000061_410 Hb_000061_410 Hb_064201_010--Hb_000061_410 Hb_000264_060 Hb_000264_060 Hb_005217_020--Hb_000264_060 Hb_002837_070 Hb_002837_070 Hb_005217_020--Hb_002837_070 Hb_000270_450 Hb_000270_450 Hb_005217_020--Hb_000270_450 Hb_001523_010 Hb_001523_010 Hb_005217_020--Hb_001523_010 Hb_000172_530 Hb_000172_530 Hb_005217_020--Hb_000172_530 Hb_009615_110 Hb_009615_110 Hb_005217_020--Hb_009615_110 Hb_005016_150--Hb_001675_060 Hb_000213_060 Hb_000213_060 Hb_005016_150--Hb_000213_060 Hb_001477_010 Hb_001477_010 Hb_005016_150--Hb_001477_010 Hb_181320_010 Hb_181320_010 Hb_005016_150--Hb_181320_010 Hb_003226_170 Hb_003226_170 Hb_005016_150--Hb_003226_170 Hb_000256_270 Hb_000256_270 Hb_005016_150--Hb_000256_270 Hb_004206_040 Hb_004206_040 Hb_000352_130--Hb_004206_040 Hb_000352_130--Hb_001146_070 Hb_000185_090 Hb_000185_090 Hb_000352_130--Hb_000185_090 Hb_000352_130--Hb_005271_030 Hb_000352_130--Hb_000213_060 Hb_000175_530 Hb_000175_530 Hb_000454_030--Hb_000175_530 Hb_000580_060 Hb_000580_060 Hb_000454_030--Hb_000580_060 Hb_000454_030--Hb_000441_230 Hb_000454_030--Hb_001146_070 Hb_000329_540 Hb_000329_540 Hb_000454_030--Hb_000329_540 Hb_000454_030--Hb_003226_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
84.6726 13.6318 1.3561 13.1445 139.153 187.328
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
66.0835 43.3453 3.28433 1.24903 1.93537

CAGE analysis