Hb_003376_180

Information

Type -
Description -
Location Contig3376: 122446-129091
Sequence    

Annotation

kegg
ID rcu:RCOM_1357410
description protein binding protein, putative
nr
ID XP_012082323.1
description PREDICTED: E3 ubiquitin-protein ligase MBR1 [Jatropha curcas]
swissprot
ID O49500
description E3 ubiquitin-protein ligase MBR2 OS=Arabidopsis thaliana GN=MBR2 PE=1 SV=1
trembl
ID A0A067K206
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16487 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase mbr1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35339: 123424-135593 , PASA_asmbl_35340: 123456-130924 , PASA_asmbl_35341: 123456-135527 , PASA_asmbl_35344: 123620-123938
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003376_180 0.0 - - PREDICTED: E3 ubiquitin-protein ligase MBR1 [Jatropha curcas]
2 Hb_007218_120 0.0747669543 - - PREDICTED: pentatricopeptide repeat-containing protein At1g51965, mitochondrial [Jatropha curcas]
3 Hb_000110_140 0.0842568983 - - soluble inorganic pyrophosphatase [Hevea brasiliensis]
4 Hb_002477_290 0.0851889341 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [Jatropha curcas]
5 Hb_005653_070 0.0854877515 - - K+ transport growth defect-like protein [Hevea brasiliensis]
6 Hb_002660_170 0.0865195568 - - PREDICTED: dystrophia myotonica WD repeat-containing protein isoform X2 [Jatropha curcas]
7 Hb_001728_040 0.0870849293 - - Aconitase/3-isopropylmalate dehydratase protein [Theobroma cacao]
8 Hb_000684_040 0.0917859466 - - PREDICTED: E3 ubiquitin-protein ligase MBR1 [Jatropha curcas]
9 Hb_000251_030 0.0919661567 - - nicotinate phosphoribosyltransferase, putative [Ricinus communis]
10 Hb_015057_020 0.0926159134 - - PREDICTED: E3 SUMO-protein ligase MMS21 [Jatropha curcas]
11 Hb_002045_070 0.0950952395 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
12 Hb_006059_010 0.0963679853 - - PREDICTED: uncharacterized protein LOC105648671 [Jatropha curcas]
13 Hb_000749_050 0.0987858139 - - mitochondrial thioredoxin [Hevea brasiliensis]
14 Hb_172426_030 0.0989476591 - - acetylglucosaminyltransferase, putative [Ricinus communis]
15 Hb_002239_050 0.1014451432 - - PREDICTED: isovaleryl-CoA dehydrogenase, mitochondrial [Jatropha curcas]
16 Hb_000964_030 0.1023343807 - - ADP/ATP carrier 2 [Theobroma cacao]
17 Hb_000723_230 0.1024517876 - - hypothetical protein CISIN_1g017413mg [Citrus sinensis]
18 Hb_006538_090 0.1044597565 - - PREDICTED: IST1 homolog [Jatropha curcas]
19 Hb_032920_070 0.1047216579 - - PREDICTED: zinc finger protein-like 1 homolog [Jatropha curcas]
20 Hb_002119_130 0.1047959456 - - PREDICTED: uncharacterized protein LOC105634169 [Jatropha curcas]

Gene co-expression network

sample Hb_003376_180 Hb_003376_180 Hb_007218_120 Hb_007218_120 Hb_003376_180--Hb_007218_120 Hb_000110_140 Hb_000110_140 Hb_003376_180--Hb_000110_140 Hb_002477_290 Hb_002477_290 Hb_003376_180--Hb_002477_290 Hb_005653_070 Hb_005653_070 Hb_003376_180--Hb_005653_070 Hb_002660_170 Hb_002660_170 Hb_003376_180--Hb_002660_170 Hb_001728_040 Hb_001728_040 Hb_003376_180--Hb_001728_040 Hb_002119_130 Hb_002119_130 Hb_007218_120--Hb_002119_130 Hb_000173_410 Hb_000173_410 Hb_007218_120--Hb_000173_410 Hb_007218_120--Hb_002660_170 Hb_007218_120--Hb_000110_140 Hb_003360_040 Hb_003360_040 Hb_007218_120--Hb_003360_040 Hb_000061_230 Hb_000061_230 Hb_000110_140--Hb_000061_230 Hb_000454_090 Hb_000454_090 Hb_000110_140--Hb_000454_090 Hb_000173_470 Hb_000173_470 Hb_000110_140--Hb_000173_470 Hb_000110_140--Hb_002660_170 Hb_004880_150 Hb_004880_150 Hb_002477_290--Hb_004880_150 Hb_000841_050 Hb_000841_050 Hb_002477_290--Hb_000841_050 Hb_002477_290--Hb_002660_170 Hb_002477_290--Hb_007218_120 Hb_000251_030 Hb_000251_030 Hb_002477_290--Hb_000251_030 Hb_006059_010 Hb_006059_010 Hb_002477_290--Hb_006059_010 Hb_000964_030 Hb_000964_030 Hb_005653_070--Hb_000964_030 Hb_038574_010 Hb_038574_010 Hb_005653_070--Hb_038574_010 Hb_189216_010 Hb_189216_010 Hb_005653_070--Hb_189216_010 Hb_005653_070--Hb_001728_040 Hb_005653_070--Hb_007218_120 Hb_000069_640 Hb_000069_640 Hb_005653_070--Hb_000069_640 Hb_000025_190 Hb_000025_190 Hb_002660_170--Hb_000025_190 Hb_002660_170--Hb_006059_010 Hb_000060_050 Hb_000060_050 Hb_002660_170--Hb_000060_050 Hb_000012_310 Hb_000012_310 Hb_002660_170--Hb_000012_310 Hb_002303_020 Hb_002303_020 Hb_001728_040--Hb_002303_020 Hb_000847_060 Hb_000847_060 Hb_001728_040--Hb_000847_060 Hb_000723_230 Hb_000723_230 Hb_001728_040--Hb_000723_230 Hb_015057_020 Hb_015057_020 Hb_001728_040--Hb_015057_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.11454 8.10257 7.25172 14.3185 2.19253 2.5088
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.1541 12.9602 8.6713 11.3183 10.0786

CAGE analysis