Hb_003376_190

Information

Type -
Description -
Location Contig3376: 139701-143292
Sequence    

Annotation

kegg
ID rcu:RCOM_1356980
description syntaxin, putative
nr
ID XP_002519551.1
description syntaxin, putative [Ricinus communis]
swissprot
ID Q9SF29
description Syntaxin-71 OS=Arabidopsis thaliana GN=SYP71 PE=1 SV=1
trembl
ID B9S0N2
description Syntaxin, putative OS=Ricinus communis GN=RCOM_1356980 PE=4 SV=1
Gene Ontology
ID GO:0005783
description syntaxin-71-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35345: 139761-143257
cDNA
(Sanger)
(ID:Location)		 011_D13.ab1: 139761-141794 , 044_B23.ab1: 139761-141585

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003376_190 0.0 - - syntaxin, putative [Ricinus communis]
2 Hb_000107_300 0.0681749515 - - PREDICTED: AP-1 complex subunit sigma-2 [Jatropha curcas]
3 Hb_002324_010 0.0697593154 - - PREDICTED: proteasome subunit alpha type-7 [Jatropha curcas]
4 Hb_000215_330 0.0741289221 - - PREDICTED: AP-4 complex subunit sigma [Jatropha curcas]
5 Hb_005235_030 0.0798009215 - - PREDICTED: dolichol phosphate-mannose biosynthesis regulatory protein [Eucalyptus grandis]
6 Hb_005269_080 0.0820494337 - - protein with unknown function [Ricinus communis]
7 Hb_006915_040 0.0855759861 - - PREDICTED: prefoldin subunit 6 [Eucalyptus grandis]
8 Hb_072922_020 0.0878807635 - - SNARE-like superfamily protein [Theobroma cacao]
9 Hb_003494_050 0.0897040051 - - hypothetical protein PRUPE_ppa013459mg [Prunus persica]
10 Hb_005306_070 0.0899047692 - - PREDICTED: coatomer subunit zeta-1-like [Jatropha curcas]
11 Hb_000302_280 0.0954036866 - - hypothetical protein ZEAMMB73_772347 [Zea mays]
12 Hb_003018_050 0.0984524806 - - PREDICTED: peptidyl-prolyl cis-trans isomerase Pin1 [Jatropha curcas]
13 Hb_002838_030 0.0988315166 - - 40S ribosomal protein S25A [Hevea brasiliensis]
14 Hb_002303_060 0.0991544202 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005045_070 0.0993532882 - - PREDICTED: deSI-like protein At4g17486 [Jatropha curcas]
16 Hb_000254_050 0.0999619508 - - hypothetical protein VITISV_010510 [Vitis vinifera]
17 Hb_000087_130 0.1008449371 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial [Jatropha curcas]
18 Hb_179296_010 0.1010484907 - - hypothetical protein B456_006G094200 [Gossypium raimondii]
19 Hb_000701_100 0.1021009953 - - PREDICTED: ribose-phosphate pyrophosphokinase 1 [Jatropha curcas]
20 Hb_002314_010 0.1021162923 - - hypothetical protein JCGZ_15712 [Jatropha curcas]

Gene co-expression network

sample Hb_003376_190 Hb_003376_190 Hb_000107_300 Hb_000107_300 Hb_003376_190--Hb_000107_300 Hb_002324_010 Hb_002324_010 Hb_003376_190--Hb_002324_010 Hb_000215_330 Hb_000215_330 Hb_003376_190--Hb_000215_330 Hb_005235_030 Hb_005235_030 Hb_003376_190--Hb_005235_030 Hb_005269_080 Hb_005269_080 Hb_003376_190--Hb_005269_080 Hb_006915_040 Hb_006915_040 Hb_003376_190--Hb_006915_040 Hb_000107_300--Hb_000215_330 Hb_002314_010 Hb_002314_010 Hb_000107_300--Hb_002314_010 Hb_002303_060 Hb_002303_060 Hb_000107_300--Hb_002303_060 Hb_005306_070 Hb_005306_070 Hb_000107_300--Hb_005306_070 Hb_000826_100 Hb_000826_100 Hb_000107_300--Hb_000826_100 Hb_005045_070 Hb_005045_070 Hb_002324_010--Hb_005045_070 Hb_000384_120 Hb_000384_120 Hb_002324_010--Hb_000384_120 Hb_001172_100 Hb_001172_100 Hb_002324_010--Hb_001172_100 Hb_072922_020 Hb_072922_020 Hb_002324_010--Hb_072922_020 Hb_138585_040 Hb_138585_040 Hb_002324_010--Hb_138585_040 Hb_000215_330--Hb_005306_070 Hb_000215_330--Hb_002314_010 Hb_003494_050 Hb_003494_050 Hb_000215_330--Hb_003494_050 Hb_000215_330--Hb_002303_060 Hb_179296_010 Hb_179296_010 Hb_005235_030--Hb_179296_010 Hb_016734_070 Hb_016734_070 Hb_005235_030--Hb_016734_070 Hb_001512_080 Hb_001512_080 Hb_005235_030--Hb_001512_080 Hb_007065_010 Hb_007065_010 Hb_005235_030--Hb_007065_010 Hb_000254_050 Hb_000254_050 Hb_005235_030--Hb_000254_050 Hb_005269_080--Hb_002303_060 Hb_000922_040 Hb_000922_040 Hb_005269_080--Hb_000922_040 Hb_005269_080--Hb_000254_050 Hb_005269_080--Hb_000384_120 Hb_001053_140 Hb_001053_140 Hb_005269_080--Hb_001053_140 Hb_000701_100 Hb_000701_100 Hb_005269_080--Hb_000701_100 Hb_000087_130 Hb_000087_130 Hb_006915_040--Hb_000087_130 Hb_000189_240 Hb_000189_240 Hb_006915_040--Hb_000189_240 Hb_002000_140 Hb_002000_140 Hb_006915_040--Hb_002000_140 Hb_006915_040--Hb_179296_010 Hb_174865_010 Hb_174865_010 Hb_006915_040--Hb_174865_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.86524 6.16275 13.6459 37.5406 12.6099 18.5486
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.0166 75.3011 28.0334 16.9475 13.4595

CAGE analysis