Hb_003376_200

Information

Type transcription factor
Description TF Family: C2H2
Location Contig3376: 147242-149200
Sequence    

Annotation

kegg
ID rcu:RCOM_1356760
description nucleic acid binding protein, putative
nr
ID XP_002519549.1
description nucleic acid binding protein, putative [Ricinus communis]
swissprot
ID Q700D2
description Zinc finger protein JACKDAW OS=Arabidopsis thaliana GN=JKD PE=1 SV=1
trembl
ID B9S0N0
description Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_1356760 PE=4 SV=1
Gene Ontology
ID GO:0003676
description zinc finger protein jackdaw-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35346: 148326-148668
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003376_200 0.0 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
2 Hb_134017_010 0.0757846848 - - kinase, putative [Ricinus communis]
3 Hb_074312_020 0.095110314 - - cytochrome P450, putative [Ricinus communis]
4 Hb_004447_020 0.0976388463 - - carbohydrate binding protein, putative [Ricinus communis]
5 Hb_001862_060 0.1021842027 - - PREDICTED: uncharacterized protein LOC105639802 isoform X1 [Jatropha curcas]
6 Hb_000407_080 0.1031289746 - - 1-aminocyclopropane-1-carboxylate oxidase [Hevea brasiliensis]
7 Hb_008406_020 0.1076426674 - - PREDICTED: probable aminotransferase TAT2 [Jatropha curcas]
8 Hb_009581_040 0.1079022926 - - hypothetical protein B456_011G052100 [Gossypium raimondii]
9 Hb_000579_180 0.1085553213 transcription factor TF Family: bZIP PREDICTED: ocs element-binding factor 1-like [Jatropha curcas]
10 Hb_020285_010 0.1094092752 - - PREDICTED: putative serine/threonine-protein kinase-like protein CCR3, partial [Pyrus x bretschneideri]
11 Hb_000836_390 0.1122449053 - - PREDICTED: neurofilament light polypeptide-like [Gossypium raimondii]
12 Hb_003430_020 0.1122712169 - - PREDICTED: aldehyde dehydrogenase family 2 member B7, mitochondrial-like [Jatropha curcas]
13 Hb_000255_020 0.1123611148 - - PREDICTED: cysteine-rich receptor-like protein kinase 10 [Jatropha curcas]
14 Hb_003439_020 0.1134944601 - - PREDICTED: L-type lectin-domain containing receptor kinase IV.1-like [Solanum lycopersicum]
15 Hb_000335_050 0.114477915 - - PREDICTED: CASP-like protein 4A1 isoform X1 [Jatropha curcas]
16 Hb_001894_040 0.1167680901 - - PREDICTED: carbonic anhydrase 2 isoform X1 [Jatropha curcas]
17 Hb_003807_020 0.1169294673 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
18 Hb_130967_010 0.1183841615 - - UDP-glucosyltransferase, putative [Ricinus communis]
19 Hb_009581_050 0.120840851 - - hypothetical protein CISIN_1g0025812mg, partial [Citrus sinensis]
20 Hb_013914_020 0.1216815478 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]

Gene co-expression network

sample Hb_003376_200 Hb_003376_200 Hb_134017_010 Hb_134017_010 Hb_003376_200--Hb_134017_010 Hb_074312_020 Hb_074312_020 Hb_003376_200--Hb_074312_020 Hb_004447_020 Hb_004447_020 Hb_003376_200--Hb_004447_020 Hb_001862_060 Hb_001862_060 Hb_003376_200--Hb_001862_060 Hb_000407_080 Hb_000407_080 Hb_003376_200--Hb_000407_080 Hb_008406_020 Hb_008406_020 Hb_003376_200--Hb_008406_020 Hb_003439_020 Hb_003439_020 Hb_134017_010--Hb_003439_020 Hb_003439_090 Hb_003439_090 Hb_134017_010--Hb_003439_090 Hb_134017_010--Hb_074312_020 Hb_130967_010 Hb_130967_010 Hb_134017_010--Hb_130967_010 Hb_003430_020 Hb_003430_020 Hb_134017_010--Hb_003430_020 Hb_074312_020--Hb_003439_020 Hb_074312_020--Hb_001862_060 Hb_046101_010 Hb_046101_010 Hb_074312_020--Hb_046101_010 Hb_002276_100 Hb_002276_100 Hb_074312_020--Hb_002276_100 Hb_001369_070 Hb_001369_070 Hb_074312_020--Hb_001369_070 Hb_003807_020 Hb_003807_020 Hb_004447_020--Hb_003807_020 Hb_000335_050 Hb_000335_050 Hb_004447_020--Hb_000335_050 Hb_002805_150 Hb_002805_150 Hb_004447_020--Hb_002805_150 Hb_000579_180 Hb_000579_180 Hb_004447_020--Hb_000579_180 Hb_012753_200 Hb_012753_200 Hb_004447_020--Hb_012753_200 Hb_001862_060--Hb_003439_020 Hb_038777_010 Hb_038777_010 Hb_001862_060--Hb_038777_010 Hb_001862_060--Hb_134017_010 Hb_009581_040 Hb_009581_040 Hb_001862_060--Hb_009581_040 Hb_001894_040 Hb_001894_040 Hb_001862_060--Hb_001894_040 Hb_013914_020 Hb_013914_020 Hb_000407_080--Hb_013914_020 Hb_009581_050 Hb_009581_050 Hb_000407_080--Hb_009581_050 Hb_000586_100 Hb_000586_100 Hb_000407_080--Hb_000586_100 Hb_000407_080--Hb_134017_010 Hb_000407_080--Hb_003439_090 Hb_000407_080--Hb_003807_020 Hb_008406_020--Hb_009581_040 Hb_000907_120 Hb_000907_120 Hb_008406_020--Hb_000907_120 Hb_008406_020--Hb_002276_100 Hb_008226_120 Hb_008226_120 Hb_008406_020--Hb_008226_120 Hb_008406_020--Hb_003430_020 Hb_068332_010 Hb_068332_010 Hb_008406_020--Hb_068332_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0152094 0.825031 0.204235 0.421148 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.795472 0.138162

CAGE analysis