Hb_003376_210

Information

Type -
Description -
Location Contig3376: 150535-151983
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003376_210 0.0 - - -
2 Hb_001922_080 0.1460587964 - - Tellurite resistance protein tehA, putative [Ricinus communis]
3 Hb_000387_060 0.1659743811 - - -
4 Hb_000329_660 0.1706822799 - - PREDICTED: carotenoid cleavage dioxygenase 7, chloroplastic [Jatropha curcas]
5 Hb_000032_350 0.1727183474 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001842_080 0.1733211995 - - -
7 Hb_002918_300 0.1743995856 - - -
8 Hb_001101_010 0.1849421622 - - hypothetical protein POPTR_0004s18730g [Populus trichocarpa]
9 Hb_001186_070 0.1911151609 - - PREDICTED: F-box protein FBW2-like [Gossypium raimondii]
10 Hb_003211_050 0.1959571392 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
11 Hb_003226_240 0.1972310416 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
12 Hb_183612_080 0.1974695312 - - hypothetical protein POPTR_0001s00500g [Populus trichocarpa]
13 Hb_005211_070 0.1979613917 - - PREDICTED: uncharacterized protein LOC105642009 [Jatropha curcas]
14 Hb_000300_210 0.1990022546 - - gd2b, putative [Ricinus communis]
15 Hb_000398_030 0.1997618647 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003592_070 0.200369117 - - -
17 Hb_010172_100 0.2023383459 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Populus euphratica]
18 Hb_002478_020 0.202516178 - - hypothetical protein POPTR_0010s19120g [Populus trichocarpa]
19 Hb_000270_730 0.2066718328 - - PREDICTED: ubiquitin-conjugating enzyme E2-23 kDa-like [Jatropha curcas]
20 Hb_032660_020 0.2095657604 - - PREDICTED: F-box protein At5g49610-like [Jatropha curcas]

Gene co-expression network

sample Hb_003376_210 Hb_003376_210 Hb_001922_080 Hb_001922_080 Hb_003376_210--Hb_001922_080 Hb_000387_060 Hb_000387_060 Hb_003376_210--Hb_000387_060 Hb_000329_660 Hb_000329_660 Hb_003376_210--Hb_000329_660 Hb_000032_350 Hb_000032_350 Hb_003376_210--Hb_000032_350 Hb_001842_080 Hb_001842_080 Hb_003376_210--Hb_001842_080 Hb_002918_300 Hb_002918_300 Hb_003376_210--Hb_002918_300 Hb_001922_080--Hb_001842_080 Hb_000398_030 Hb_000398_030 Hb_001922_080--Hb_000398_030 Hb_010172_100 Hb_010172_100 Hb_001922_080--Hb_010172_100 Hb_000270_730 Hb_000270_730 Hb_001922_080--Hb_000270_730 Hb_000316_100 Hb_000316_100 Hb_001922_080--Hb_000316_100 Hb_000544_110 Hb_000544_110 Hb_001922_080--Hb_000544_110 Hb_003211_050 Hb_003211_050 Hb_000387_060--Hb_003211_050 Hb_032660_020 Hb_032660_020 Hb_000387_060--Hb_032660_020 Hb_000387_060--Hb_000329_660 Hb_000714_010 Hb_000714_010 Hb_000387_060--Hb_000714_010 Hb_001425_110 Hb_001425_110 Hb_000387_060--Hb_001425_110 Hb_000792_120 Hb_000792_120 Hb_000387_060--Hb_000792_120 Hb_000329_660--Hb_003211_050 Hb_001373_100 Hb_001373_100 Hb_000329_660--Hb_001373_100 Hb_000300_210 Hb_000300_210 Hb_000329_660--Hb_000300_210 Hb_003226_240 Hb_003226_240 Hb_000329_660--Hb_003226_240 Hb_001276_060 Hb_001276_060 Hb_000329_660--Hb_001276_060 Hb_000696_220 Hb_000696_220 Hb_000032_350--Hb_000696_220 Hb_000853_240 Hb_000853_240 Hb_000032_350--Hb_000853_240 Hb_000963_030 Hb_000963_030 Hb_000032_350--Hb_000963_030 Hb_003198_010 Hb_003198_010 Hb_000032_350--Hb_003198_010 Hb_007943_140 Hb_007943_140 Hb_000032_350--Hb_007943_140 Hb_011689_050 Hb_011689_050 Hb_000032_350--Hb_011689_050 Hb_001842_080--Hb_000270_730 Hb_032202_250 Hb_032202_250 Hb_001842_080--Hb_032202_250 Hb_001842_080--Hb_000316_100 Hb_183612_080 Hb_183612_080 Hb_001842_080--Hb_183612_080 Hb_001842_080--Hb_010172_100 Hb_001101_010 Hb_001101_010 Hb_002918_300--Hb_001101_010 Hb_002918_300--Hb_000714_010 Hb_001799_040 Hb_001799_040 Hb_002918_300--Hb_001799_040 Hb_002431_060 Hb_002431_060 Hb_002918_300--Hb_002431_060 Hb_002918_300--Hb_032660_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.22994 0.209062 0 0.227508 1.16698 0.0519798
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.28639 10.6487 1.98195 0.620109 0

CAGE analysis