Hb_003376_240

Information

Type -
Description -
Location Contig3376: 166109-166808
Sequence    

Annotation

kegg
ID rcu:RCOM_1356640
description hypothetical protein
nr
ID XP_002519547.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8LEJ6
description Fasciclin-like arabinogalactan protein 11 OS=Arabidopsis thaliana GN=FLA11 PE=2 SV=2
trembl
ID B9S0M8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1356640 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003376_240 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_009572_010 0.1508842199 - - PREDICTED: MLP-like protein 423 [Jatropha curcas]
3 Hb_000185_020 0.1810557536 - - -
4 Hb_000504_210 0.1849342709 - - hypothetical protein JCGZ_10251 [Jatropha curcas]
5 Hb_115572_040 0.195532347 - - PREDICTED: uncharacterized protein LOC105632710 [Jatropha curcas]
6 Hb_007594_020 0.205567938 - - hypothetical protein JCGZ_18350 [Jatropha curcas]
7 Hb_086691_010 0.2162064994 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
8 Hb_028910_010 0.2206095779 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
9 Hb_001136_050 0.2216505914 - - -
10 Hb_004432_030 0.2245406284 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
11 Hb_003952_030 0.2256320292 - - hypothetical protein JCGZ_16620 [Jatropha curcas]
12 Hb_001195_700 0.2282080682 - - -
13 Hb_008375_020 0.2289889704 - - PREDICTED: uncharacterized protein LOC104894372 [Beta vulgaris subsp. vulgaris]
14 Hb_083242_040 0.2395837063 - - -
15 Hb_001715_050 0.2399616365 - - PREDICTED: probable 2-oxoglutarate-dependent dioxygenase AOP1 [Jatropha curcas]
16 Hb_003228_060 0.2399778659 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000696_200 0.2413746731 - - PREDICTED: GDSL esterase/lipase EXL3-like [Jatropha curcas]
18 Hb_006272_010 0.2422495141 - - PREDICTED: cytochrome P450 86B1 [Vitis vinifera]
19 Hb_004030_010 0.2428751208 - - hypothetical protein CICLE_v10013050mg [Citrus clementina]
20 Hb_034168_060 0.2437623879 - - ribulose-1-5-bisphosphate carboxylase/oxygenase large subunit, partial (chloroplast) [Cucumis argenteus]

Gene co-expression network

sample Hb_003376_240 Hb_003376_240 Hb_009572_010 Hb_009572_010 Hb_003376_240--Hb_009572_010 Hb_000185_020 Hb_000185_020 Hb_003376_240--Hb_000185_020 Hb_000504_210 Hb_000504_210 Hb_003376_240--Hb_000504_210 Hb_115572_040 Hb_115572_040 Hb_003376_240--Hb_115572_040 Hb_007594_020 Hb_007594_020 Hb_003376_240--Hb_007594_020 Hb_086691_010 Hb_086691_010 Hb_003376_240--Hb_086691_010 Hb_084849_030 Hb_084849_030 Hb_009572_010--Hb_084849_030 Hb_001136_050 Hb_001136_050 Hb_009572_010--Hb_001136_050 Hb_009572_010--Hb_007594_020 Hb_009572_010--Hb_000185_020 Hb_174230_010 Hb_174230_010 Hb_009572_010--Hb_174230_010 Hb_000185_020--Hb_086691_010 Hb_004138_020 Hb_004138_020 Hb_000185_020--Hb_004138_020 Hb_006331_010 Hb_006331_010 Hb_000185_020--Hb_006331_010 Hb_001081_070 Hb_001081_070 Hb_000185_020--Hb_001081_070 Hb_083242_040 Hb_083242_040 Hb_000185_020--Hb_083242_040 Hb_003952_030 Hb_003952_030 Hb_000185_020--Hb_003952_030 Hb_000504_210--Hb_000185_020 Hb_000010_230 Hb_000010_230 Hb_000504_210--Hb_000010_230 Hb_002874_250 Hb_002874_250 Hb_000504_210--Hb_002874_250 Hb_003882_030 Hb_003882_030 Hb_000504_210--Hb_003882_030 Hb_004453_120 Hb_004453_120 Hb_000504_210--Hb_004453_120 Hb_157680_010 Hb_157680_010 Hb_000504_210--Hb_157680_010 Hb_002536_020 Hb_002536_020 Hb_115572_040--Hb_002536_020 Hb_115572_040--Hb_000504_210 Hb_028910_010 Hb_028910_010 Hb_115572_040--Hb_028910_010 Hb_007749_030 Hb_007749_030 Hb_115572_040--Hb_007749_030 Hb_008375_020 Hb_008375_020 Hb_115572_040--Hb_008375_020 Hb_043327_010 Hb_043327_010 Hb_007594_020--Hb_043327_010 Hb_005171_020 Hb_005171_020 Hb_007594_020--Hb_005171_020 Hb_002997_060 Hb_002997_060 Hb_007594_020--Hb_002997_060 Hb_006272_010 Hb_006272_010 Hb_007594_020--Hb_006272_010 Hb_000504_220 Hb_000504_220 Hb_007594_020--Hb_000504_220 Hb_001089_120 Hb_001089_120 Hb_007594_020--Hb_001089_120 Hb_009095_020 Hb_009095_020 Hb_086691_010--Hb_009095_020 Hb_086691_010--Hb_003952_030 Hb_026188_010 Hb_026188_010 Hb_086691_010--Hb_026188_010 Hb_086691_010--Hb_006331_010 Hb_086691_010--Hb_001081_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0493655 0.0783035 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.149954 0 0 0 1.08391

CAGE analysis