Hb_003376_260

Information

Type -
Description -
Location Contig3376: 179710-181089
Sequence    

Annotation

kegg
ID rcu:RCOM_1356410
description hypothetical protein
nr
ID XP_012082345.1
description PREDICTED: uncharacterized protein LOC105642207 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9S0M5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1356410 PE=4 SV=1
Gene Ontology
ID GO:0008168
description PREDICTED: uncharacterized protein LOC105642207 isoform X1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003376_260 0.0 - - PREDICTED: uncharacterized protein LOC105642207 isoform X1 [Jatropha curcas]
2 Hb_024698_010 0.117502098 - - PREDICTED: RING-H2 finger protein ATL46 [Jatropha curcas]
3 Hb_074197_020 0.1190117996 - - PREDICTED: uncharacterized protein LOC105645948 [Jatropha curcas]
4 Hb_116420_040 0.1190846587 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002301_310 0.1205603407 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.4 isoform X1 [Jatropha curcas]
6 Hb_005048_140 0.135800258 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004657_090 0.1441914208 - - Chromosome-associated kinesin KLP1, putative [Ricinus communis]
8 Hb_002814_060 0.1504038545 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 [Jatropha curcas]
9 Hb_000630_030 0.1508709981 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2 isoform X1 [Populus euphratica]
10 Hb_004884_030 0.1510776439 - - PREDICTED: ammonium transporter 3 member 3 [Vitis vinifera]
11 Hb_000424_150 0.1514373453 - - PREDICTED: copper transporter 5.1-like [Jatropha curcas]
12 Hb_000608_260 0.1560788969 - - PREDICTED: probable protein phosphatase 2C 33 [Jatropha curcas]
13 Hb_000069_570 0.1586477893 - - PREDICTED: uncharacterized protein At5g05190-like isoform X1 [Jatropha curcas]
14 Hb_027380_230 0.1597934696 - - PREDICTED: CSC1-like protein ERD4 [Jatropha curcas]
15 Hb_097646_010 0.1613879981 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Populus euphratica]
16 Hb_003814_030 0.1638045659 - - PREDICTED: WAT1-related protein At5g47470-like isoform X2 [Jatropha curcas]
17 Hb_002311_190 0.1648491307 - - PREDICTED: uncharacterized protein LOC105643493 [Jatropha curcas]
18 Hb_003001_040 0.1649696934 - - Glycosyltransferase QUASIMODO1, putative [Ricinus communis]
19 Hb_002471_180 0.1656221038 - - receptor protein kinase, putative [Ricinus communis]
20 Hb_000091_060 0.1664900089 - - PREDICTED: galactose oxidase [Jatropha curcas]

Gene co-expression network

sample Hb_003376_260 Hb_003376_260 Hb_024698_010 Hb_024698_010 Hb_003376_260--Hb_024698_010 Hb_074197_020 Hb_074197_020 Hb_003376_260--Hb_074197_020 Hb_116420_040 Hb_116420_040 Hb_003376_260--Hb_116420_040 Hb_002301_310 Hb_002301_310 Hb_003376_260--Hb_002301_310 Hb_005048_140 Hb_005048_140 Hb_003376_260--Hb_005048_140 Hb_004657_090 Hb_004657_090 Hb_003376_260--Hb_004657_090 Hb_000056_010 Hb_000056_010 Hb_024698_010--Hb_000056_010 Hb_097646_010 Hb_097646_010 Hb_024698_010--Hb_097646_010 Hb_003001_040 Hb_003001_040 Hb_024698_010--Hb_003001_040 Hb_024698_010--Hb_005048_140 Hb_024698_010--Hb_116420_040 Hb_002814_060 Hb_002814_060 Hb_074197_020--Hb_002814_060 Hb_000424_150 Hb_000424_150 Hb_074197_020--Hb_000424_150 Hb_004223_290 Hb_004223_290 Hb_074197_020--Hb_004223_290 Hb_000091_060 Hb_000091_060 Hb_074197_020--Hb_000091_060 Hb_000630_030 Hb_000630_030 Hb_074197_020--Hb_000630_030 Hb_000608_260 Hb_000608_260 Hb_116420_040--Hb_000608_260 Hb_000069_570 Hb_000069_570 Hb_116420_040--Hb_000069_570 Hb_001349_030 Hb_001349_030 Hb_116420_040--Hb_001349_030 Hb_001194_020 Hb_001194_020 Hb_116420_040--Hb_001194_020 Hb_116420_040--Hb_005048_140 Hb_001059_130 Hb_001059_130 Hb_116420_040--Hb_001059_130 Hb_002301_310--Hb_074197_020 Hb_002301_310--Hb_000424_150 Hb_002301_310--Hb_002814_060 Hb_006508_030 Hb_006508_030 Hb_002301_310--Hb_006508_030 Hb_002301_310--Hb_004657_090 Hb_005048_140--Hb_000069_570 Hb_002471_180 Hb_002471_180 Hb_005048_140--Hb_002471_180 Hb_041327_020 Hb_041327_020 Hb_005048_140--Hb_041327_020 Hb_000022_190 Hb_000022_190 Hb_005048_140--Hb_000022_190 Hb_001508_020 Hb_001508_020 Hb_004657_090--Hb_001508_020 Hb_002681_170 Hb_002681_170 Hb_004657_090--Hb_002681_170 Hb_004374_080 Hb_004374_080 Hb_004657_090--Hb_004374_080 Hb_004657_090--Hb_000091_060 Hb_012404_070 Hb_012404_070 Hb_004657_090--Hb_012404_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
45.0752 52.4258 37.9294 77.719 40.7367 73.8148
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.33402 3.30129 8.15766 18.3518 51.5519

CAGE analysis