Hb_003376_270

Information

Type -
Description -
Location Contig3376: 185163-188125
Sequence    

Annotation

kegg
ID pop:POPTR_0006s13060g
description hypothetical protein
nr
ID XP_006381461.1
description hypothetical protein POPTR_0006s13060g [Populus trichocarpa]
swissprot
ID Q9S752
description Probable E3 ubiquitin-protein ligase LOG2 OS=Arabidopsis thaliana GN=LOG2 PE=1 SV=1
trembl
ID U5G6U7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s13060g PE=4 SV=1
Gene Ontology
ID GO:0008270
description probable e3 ubiquitin-protein ligase log2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35352: 185190-188360
cDNA
(Sanger)
(ID:Location)		 043_B21.ab1: 186157-188360

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003376_270 0.0 - - hypothetical protein POPTR_0006s13060g [Populus trichocarpa]
2 Hb_002947_030 0.0948536678 - - PREDICTED: uncharacterized protein LOC105633529 [Jatropha curcas]
3 Hb_000107_210 0.0978464745 - - PREDICTED: ankyrin repeat domain-containing protein 2 [Jatropha curcas]
4 Hb_000215_220 0.1030350866 - - PREDICTED: derlin-1 isoform X1 [Jatropha curcas]
5 Hb_000123_090 0.1036393297 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os03g0620400-like [Jatropha curcas]
6 Hb_001195_560 0.1068215656 - - PREDICTED: lysophospholipid acyltransferase LPEAT1 isoform X1 [Jatropha curcas]
7 Hb_000061_240 0.1082167375 - - kinase, putative [Ricinus communis]
8 Hb_007943_110 0.1098255832 - - PREDICTED: basic salivary proline-rich protein 3 [Jatropha curcas]
9 Hb_000933_020 0.1121547483 - - conserved hypothetical protein [Ricinus communis]
10 Hb_012322_020 0.1150735758 - - -
11 Hb_000085_150 0.1156734513 - - PREDICTED: putative BPI/LBP family protein At1g04970 [Jatropha curcas]
12 Hb_017295_010 0.1158415496 - - PREDICTED: uncharacterized membrane protein At1g06890 [Jatropha curcas]
13 Hb_000309_040 0.1161307231 - - PREDICTED: protein farnesyltransferase subunit beta isoform X1 [Jatropha curcas]
14 Hb_006909_070 0.1163226344 - - ABC transporter family protein [Hevea brasiliensis]
15 Hb_001882_050 0.1164037702 - - hydroxysteroid dehydrogenase, putative [Ricinus communis]
16 Hb_000008_220 0.1174160731 transcription factor TF Family: ARF PREDICTED: auxin response factor 10 [Jatropha curcas]
17 Hb_090051_030 0.1177111678 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
18 Hb_033642_030 0.1180676813 - - PREDICTED: G-protein coupled receptor 1 isoform X1 [Jatropha curcas]
19 Hb_000060_090 0.1186688244 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-4a [Jatropha curcas]
20 Hb_005000_320 0.1190279103 - - PREDICTED: casein kinase I isoform delta-like [Jatropha curcas]

Gene co-expression network

sample Hb_003376_270 Hb_003376_270 Hb_002947_030 Hb_002947_030 Hb_003376_270--Hb_002947_030 Hb_000107_210 Hb_000107_210 Hb_003376_270--Hb_000107_210 Hb_000215_220 Hb_000215_220 Hb_003376_270--Hb_000215_220 Hb_000123_090 Hb_000123_090 Hb_003376_270--Hb_000123_090 Hb_001195_560 Hb_001195_560 Hb_003376_270--Hb_001195_560 Hb_000061_240 Hb_000061_240 Hb_003376_270--Hb_000061_240 Hb_007672_060 Hb_007672_060 Hb_002947_030--Hb_007672_060 Hb_033642_030 Hb_033642_030 Hb_002947_030--Hb_033642_030 Hb_007919_100 Hb_007919_100 Hb_002947_030--Hb_007919_100 Hb_019280_030 Hb_019280_030 Hb_002947_030--Hb_019280_030 Hb_007943_110 Hb_007943_110 Hb_002947_030--Hb_007943_110 Hb_007657_010 Hb_007657_010 Hb_002947_030--Hb_007657_010 Hb_017295_010 Hb_017295_010 Hb_000107_210--Hb_017295_010 Hb_058999_030 Hb_058999_030 Hb_000107_210--Hb_058999_030 Hb_006909_070 Hb_006909_070 Hb_000107_210--Hb_006909_070 Hb_000101_380 Hb_000101_380 Hb_000107_210--Hb_000101_380 Hb_005227_010 Hb_005227_010 Hb_000107_210--Hb_005227_010 Hb_012215_010 Hb_012215_010 Hb_000107_210--Hb_012215_010 Hb_001109_060 Hb_001109_060 Hb_000215_220--Hb_001109_060 Hb_000982_050 Hb_000982_050 Hb_000215_220--Hb_000982_050 Hb_089140_050 Hb_089140_050 Hb_000215_220--Hb_089140_050 Hb_004631_150 Hb_004631_150 Hb_000215_220--Hb_004631_150 Hb_011344_020 Hb_011344_020 Hb_000215_220--Hb_011344_020 Hb_000139_260 Hb_000139_260 Hb_000215_220--Hb_000139_260 Hb_008864_110 Hb_008864_110 Hb_000123_090--Hb_008864_110 Hb_000933_020 Hb_000933_020 Hb_000123_090--Hb_000933_020 Hb_003605_130 Hb_003605_130 Hb_000123_090--Hb_003605_130 Hb_002400_470 Hb_002400_470 Hb_000123_090--Hb_002400_470 Hb_000123_090--Hb_001195_560 Hb_001047_030 Hb_001047_030 Hb_000123_090--Hb_001047_030 Hb_007426_150 Hb_007426_150 Hb_001195_560--Hb_007426_150 Hb_003018_130 Hb_003018_130 Hb_001195_560--Hb_003018_130 Hb_028308_010 Hb_028308_010 Hb_001195_560--Hb_028308_010 Hb_000617_100 Hb_000617_100 Hb_001195_560--Hb_000617_100 Hb_014361_070 Hb_014361_070 Hb_001195_560--Hb_014361_070 Hb_002823_030 Hb_002823_030 Hb_001195_560--Hb_002823_030 Hb_030827_020 Hb_030827_020 Hb_000061_240--Hb_030827_020 Hb_000120_130 Hb_000120_130 Hb_000061_240--Hb_000120_130 Hb_002267_140 Hb_002267_140 Hb_000061_240--Hb_002267_140 Hb_000479_220 Hb_000479_220 Hb_000061_240--Hb_000479_220 Hb_002400_460 Hb_002400_460 Hb_000061_240--Hb_002400_460 Hb_138596_010 Hb_138596_010 Hb_000061_240--Hb_138596_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.441 18.7977 13.0302 27.5828 29.5126 23.8653
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.029 17.2858 12.0181 5.61094 18.1703

CAGE analysis