Hb_003376_310

Information

Type -
Description -
Location Contig3376: 206794-207162
Sequence    

Annotation

kegg
ID pmum:103342130
description uncharacterized LOC103342130
nr
ID KDP29111.1
description hypothetical protein JCGZ_16500 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JYR8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16500 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003376_310 0.0 - - hypothetical protein JCGZ_16500 [Jatropha curcas]
2 Hb_164945_040 0.147321521 - - PREDICTED: uncharacterized protein LOC105628261 [Jatropha curcas]
3 Hb_001096_100 0.1691853685 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000836_120 0.1811427327 - - syntaxin, putative [Ricinus communis]
5 Hb_000853_030 0.1939297176 - - sucrose synthase 2 [Hevea brasiliensis]
6 Hb_060237_020 0.1953840129 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001638_040 0.1990920795 - - Nucleobase-ascorbate transporter 3 [Glycine soja]
8 Hb_002301_380 0.1991830503 - - PREDICTED: VQ motif-containing protein 4 [Jatropha curcas]
9 Hb_129204_060 0.2051307645 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
10 Hb_000215_410 0.220441212 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
11 Hb_002235_240 0.2208986137 - - xenotropic and polytropic murine leukemia virus receptor ids-4, putative [Ricinus communis]
12 Hb_000390_100 0.2238519099 - - alpha-hydroxynitrile lyase family protein [Populus trichocarpa]
13 Hb_004108_170 0.2270973989 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003849_260 0.2375683454 - - PREDICTED: uncharacterized protein LOC105644666 [Jatropha curcas]
15 Hb_005096_010 0.2398847048 - - PREDICTED: uncharacterized protein LOC105641403 [Jatropha curcas]
16 Hb_000449_050 0.24120537 - - Protein bem46, putative [Ricinus communis]
17 Hb_002273_050 0.2412472649 - - PREDICTED: geranylgeranyl diphosphate reductase, chloroplastic-like [Jatropha curcas]
18 Hb_005725_060 0.2423772303 - - PREDICTED: U-box domain-containing protein 30-like [Jatropha curcas]
19 Hb_000243_380 0.2431131053 - - PREDICTED: histone H1 [Jatropha curcas]
20 Hb_002739_150 0.2431415164 - - Uncharacterized protein TCM_016791 [Theobroma cacao]

Gene co-expression network

sample Hb_003376_310 Hb_003376_310 Hb_164945_040 Hb_164945_040 Hb_003376_310--Hb_164945_040 Hb_001096_100 Hb_001096_100 Hb_003376_310--Hb_001096_100 Hb_000836_120 Hb_000836_120 Hb_003376_310--Hb_000836_120 Hb_000853_030 Hb_000853_030 Hb_003376_310--Hb_000853_030 Hb_060237_020 Hb_060237_020 Hb_003376_310--Hb_060237_020 Hb_001638_040 Hb_001638_040 Hb_003376_310--Hb_001638_040 Hb_164945_040--Hb_001096_100 Hb_002301_380 Hb_002301_380 Hb_164945_040--Hb_002301_380 Hb_164945_040--Hb_000836_120 Hb_164945_040--Hb_001638_040 Hb_164945_040--Hb_000853_030 Hb_001096_100--Hb_002301_380 Hb_155396_010 Hb_155396_010 Hb_001096_100--Hb_155396_010 Hb_004218_090 Hb_004218_090 Hb_001096_100--Hb_004218_090 Hb_003125_030 Hb_003125_030 Hb_001096_100--Hb_003125_030 Hb_005725_060 Hb_005725_060 Hb_001096_100--Hb_005725_060 Hb_002273_050 Hb_002273_050 Hb_000836_120--Hb_002273_050 Hb_002235_240 Hb_002235_240 Hb_000836_120--Hb_002235_240 Hb_129204_060 Hb_129204_060 Hb_000836_120--Hb_129204_060 Hb_003849_260 Hb_003849_260 Hb_000836_120--Hb_003849_260 Hb_000215_410 Hb_000215_410 Hb_000836_120--Hb_000215_410 Hb_000836_120--Hb_001638_040 Hb_000853_030--Hb_001638_040 Hb_164010_070 Hb_164010_070 Hb_000853_030--Hb_164010_070 Hb_000390_100 Hb_000390_100 Hb_000853_030--Hb_000390_100 Hb_000932_070 Hb_000932_070 Hb_000853_030--Hb_000932_070 Hb_002739_150 Hb_002739_150 Hb_000853_030--Hb_002739_150 Hb_001396_260 Hb_001396_260 Hb_000853_030--Hb_001396_260 Hb_008864_040 Hb_008864_040 Hb_060237_020--Hb_008864_040 Hb_060237_020--Hb_000390_100 Hb_000215_100 Hb_000215_100 Hb_060237_020--Hb_000215_100 Hb_002173_020 Hb_002173_020 Hb_060237_020--Hb_002173_020 Hb_000627_180 Hb_000627_180 Hb_060237_020--Hb_000627_180 Hb_001055_030 Hb_001055_030 Hb_060237_020--Hb_001055_030 Hb_010831_020 Hb_010831_020 Hb_001638_040--Hb_010831_020 Hb_000540_120 Hb_000540_120 Hb_001638_040--Hb_000540_120 Hb_000449_050 Hb_000449_050 Hb_001638_040--Hb_000449_050 Hb_001638_040--Hb_164010_070 Hb_001638_040--Hb_002739_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.78031 10.0123 0.448837 2.27312 2.02832 1.14537
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.04731 0.638112 0.892621 2.67305 0

CAGE analysis