Hb_003376_320

Information

Type -
Description -
Location Contig3376: 210408-210908
Sequence    

Annotation

kegg
ID rcu:RCOM_0153900
description 60S ribosomal protein L12, putative
nr
ID ADR71265.1
description 60S ribosomal protein L12A [Hevea brasiliensis]
swissprot
ID O50003
description 60S ribosomal protein L12 OS=Prunus armeniaca GN=RPL12 PE=2 SV=1
trembl
ID I3NMM8
description 60S ribosomal protein L12A OS=Hevea brasiliensis GN=RPL12A PE=2 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35358: 210220-211100
cDNA
(Sanger)
(ID:Location)		 008_F23.ab1: 210316-211014 , 051_D08.ab1: 210419-211098 , 053_D11.ab1: 210372-211098

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003376_320 0.0 - - 60S ribosomal protein L12A [Hevea brasiliensis]
2 Hb_000780_060 0.0842185532 - - hypothetical protein CICLE_v10017178mg [Citrus clementina]
3 Hb_007590_010 0.0900047109 - - ubiquitin-protein ligase, putative [Ricinus communis]
4 Hb_000349_060 0.092555833 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
5 Hb_001946_210 0.093555185 - - ribosomal protein l7ae, putative [Ricinus communis]
6 Hb_001358_030 0.0939876611 - - PREDICTED: 40S ribosomal protein S3-3-like [Populus euphratica]
7 Hb_000742_140 0.0955334728 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000008_330 0.0972306788 - - 60S ribosomal protein L12A [Hevea brasiliensis]
9 Hb_004440_050 0.0976044595 - - PREDICTED: anaphase-promoting complex subunit 10 [Cucumis melo]
10 Hb_000084_290 0.098304933 - - mitochondrial 39S ribosomal protein L53 [Hevea brasiliensis]
11 Hb_000019_230 0.098410454 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
12 Hb_011828_050 0.0986465049 - - 40S ribosomal protein S23, putative [Ricinus communis]
13 Hb_001047_100 0.099507515 - - 40S ribosomal protein S18, putative [Ricinus communis]
14 Hb_000099_240 0.099663372 - - 60S ribosomal protein L7a, putative [Ricinus communis]
15 Hb_143813_010 0.0997785324 - - PREDICTED: 60S ribosomal protein L13-1 [Nelumbo nucifera]
16 Hb_005332_070 0.1024615335 - - PREDICTED: uncharacterized protein LOC105632487 [Jatropha curcas]
17 Hb_105386_010 0.1026820405 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
18 Hb_002659_070 0.1040954202 - - PREDICTED: RNA-binding protein 24-A [Jatropha curcas]
19 Hb_001369_660 0.10489815 - - hypothetical protein B456_001G174200, partial [Gossypium raimondii]
20 Hb_009767_120 0.1055446133 - - PREDICTED: probable prefoldin subunit 2 [Jatropha curcas]

Gene co-expression network

sample Hb_003376_320 Hb_003376_320 Hb_000780_060 Hb_000780_060 Hb_003376_320--Hb_000780_060 Hb_007590_010 Hb_007590_010 Hb_003376_320--Hb_007590_010 Hb_000349_060 Hb_000349_060 Hb_003376_320--Hb_000349_060 Hb_001946_210 Hb_001946_210 Hb_003376_320--Hb_001946_210 Hb_001358_030 Hb_001358_030 Hb_003376_320--Hb_001358_030 Hb_000742_140 Hb_000742_140 Hb_003376_320--Hb_000742_140 Hb_000780_060--Hb_000349_060 Hb_002983_010 Hb_002983_010 Hb_000780_060--Hb_002983_010 Hb_000780_060--Hb_001358_030 Hb_001301_160 Hb_001301_160 Hb_000780_060--Hb_001301_160 Hb_003038_030 Hb_003038_030 Hb_000780_060--Hb_003038_030 Hb_000060_040 Hb_000060_040 Hb_000780_060--Hb_000060_040 Hb_000099_240 Hb_000099_240 Hb_007590_010--Hb_000099_240 Hb_007590_010--Hb_001358_030 Hb_005333_070 Hb_005333_070 Hb_007590_010--Hb_005333_070 Hb_001226_160 Hb_001226_160 Hb_007590_010--Hb_001226_160 Hb_000923_020 Hb_000923_020 Hb_007590_010--Hb_000923_020 Hb_168000_010 Hb_168000_010 Hb_007590_010--Hb_168000_010 Hb_004944_010 Hb_004944_010 Hb_000349_060--Hb_004944_010 Hb_105386_010 Hb_105386_010 Hb_000349_060--Hb_105386_010 Hb_023001_050 Hb_023001_050 Hb_000349_060--Hb_023001_050 Hb_000349_060--Hb_001358_030 Hb_000465_430 Hb_000465_430 Hb_000349_060--Hb_000465_430 Hb_003939_080 Hb_003939_080 Hb_001946_210--Hb_003939_080 Hb_002868_010 Hb_002868_010 Hb_001946_210--Hb_002868_010 Hb_000101_270 Hb_000101_270 Hb_001946_210--Hb_000101_270 Hb_046049_010 Hb_046049_010 Hb_001946_210--Hb_046049_010 Hb_000380_190 Hb_000380_190 Hb_001946_210--Hb_000380_190 Hb_002311_350 Hb_002311_350 Hb_001946_210--Hb_002311_350 Hb_000640_240 Hb_000640_240 Hb_001358_030--Hb_000640_240 Hb_012008_020 Hb_012008_020 Hb_001358_030--Hb_012008_020 Hb_001358_030--Hb_105386_010 Hb_096563_010 Hb_096563_010 Hb_001358_030--Hb_096563_010 Hb_002660_080 Hb_002660_080 Hb_001358_030--Hb_002660_080 Hb_000189_340 Hb_000189_340 Hb_001358_030--Hb_000189_340 Hb_000714_030 Hb_000714_030 Hb_000742_140--Hb_000714_030 Hb_000084_290 Hb_000084_290 Hb_000742_140--Hb_000084_290 Hb_000933_180 Hb_000933_180 Hb_000742_140--Hb_000933_180 Hb_009767_120 Hb_009767_120 Hb_000742_140--Hb_009767_120 Hb_011828_050 Hb_011828_050 Hb_000742_140--Hb_011828_050 Hb_000462_140 Hb_000462_140 Hb_000742_140--Hb_000462_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
212.646 157.368 83.3728 103.29 250.463 367.508
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
174.575 407.767 124.858 91.3375 34.0046

CAGE analysis