Hb_003376_350

Information

Type -
Description -
Location Contig3376: 234885-237517
Sequence    

Annotation

kegg
ID rcu:RCOM_1355800
description hypothetical protein
nr
ID XP_012082358.1
description PREDICTED: CASP-like protein 5A1 isoform X1 [Jatropha curcas]
swissprot
ID Q6NPF8
description CASP-like protein 5A1 OS=Arabidopsis thaliana GN=At2g37200 PE=2 SV=1
trembl
ID A0A067K9Z9
description CASP-like protein OS=Jatropha curcas GN=JCGZ_16504 PE=3 SV=1
Gene Ontology
ID GO:0005886
description casp-like protein 5a1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35361: 234946-237438
cDNA
(Sanger)
(ID:Location)		 020_O02.ab1: 235430-237438

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003376_350 0.0 - - PREDICTED: CASP-like protein 5A1 isoform X1 [Jatropha curcas]
2 Hb_004907_110 0.0716556994 - - PREDICTED: BTB/POZ and MATH domain-containing protein 3 isoform X1 [Jatropha curcas]
3 Hb_002631_060 0.0731812734 - - PREDICTED: uncharacterized protein LOC105646151 [Jatropha curcas]
4 Hb_000926_330 0.0783157436 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
5 Hb_004994_140 0.080114183 - - PREDICTED: digalactosyldiacylglycerol synthase 2, chloroplastic [Jatropha curcas]
6 Hb_000189_560 0.083294107 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1 [Jatropha curcas]
7 Hb_007532_030 0.083450548 - - PREDICTED: F-box/kelch-repeat protein At1g30090 [Jatropha curcas]
8 Hb_031527_040 0.0847253551 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
9 Hb_008725_260 0.0875815122 - - PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]
10 Hb_000866_220 0.0891797817 - - PREDICTED: uncharacterized protein LOC105642989 [Jatropha curcas]
11 Hb_005551_050 0.0898099677 - - PREDICTED: nudix hydrolase 27, chloroplastic [Jatropha curcas]
12 Hb_000062_220 0.0908545285 - - BnaC02g35870D [Brassica napus]
13 Hb_007426_180 0.0921016172 - - PREDICTED: probable inositol transporter 2 [Jatropha curcas]
14 Hb_001892_020 0.0941335334 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
15 Hb_007416_320 0.0964726692 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000679_090 0.0965955235 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Jatropha curcas]
17 Hb_000696_040 0.0987968064 - - protein phosphatase 2c, putative [Ricinus communis]
18 Hb_126643_020 0.0991209991 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1 [Jatropha curcas]
19 Hb_001488_070 0.1002131782 - - conserved hypothetical protein [Ricinus communis]
20 Hb_005015_070 0.1003261958 - - PREDICTED: pentatricopeptide repeat-containing protein At4g39530 [Jatropha curcas]

Gene co-expression network

sample Hb_003376_350 Hb_003376_350 Hb_004907_110 Hb_004907_110 Hb_003376_350--Hb_004907_110 Hb_002631_060 Hb_002631_060 Hb_003376_350--Hb_002631_060 Hb_000926_330 Hb_000926_330 Hb_003376_350--Hb_000926_330 Hb_004994_140 Hb_004994_140 Hb_003376_350--Hb_004994_140 Hb_000189_560 Hb_000189_560 Hb_003376_350--Hb_000189_560 Hb_007532_030 Hb_007532_030 Hb_003376_350--Hb_007532_030 Hb_000805_020 Hb_000805_020 Hb_004907_110--Hb_000805_020 Hb_004907_110--Hb_007532_030 Hb_008725_260 Hb_008725_260 Hb_004907_110--Hb_008725_260 Hb_031527_040 Hb_031527_040 Hb_004907_110--Hb_031527_040 Hb_000876_070 Hb_000876_070 Hb_004907_110--Hb_000876_070 Hb_004907_110--Hb_002631_060 Hb_010883_090 Hb_010883_090 Hb_002631_060--Hb_010883_090 Hb_007416_320 Hb_007416_320 Hb_002631_060--Hb_007416_320 Hb_000260_270 Hb_000260_270 Hb_002631_060--Hb_000260_270 Hb_000395_190 Hb_000395_190 Hb_002631_060--Hb_000395_190 Hb_000224_170 Hb_000224_170 Hb_000926_330--Hb_000224_170 Hb_000926_330--Hb_031527_040 Hb_000926_330--Hb_004907_110 Hb_000061_420 Hb_000061_420 Hb_000926_330--Hb_000061_420 Hb_000181_070 Hb_000181_070 Hb_000926_330--Hb_000181_070 Hb_000069_420 Hb_000069_420 Hb_004994_140--Hb_000069_420 Hb_004994_140--Hb_007416_320 Hb_012107_060 Hb_012107_060 Hb_004994_140--Hb_012107_060 Hb_005846_040 Hb_005846_040 Hb_004994_140--Hb_005846_040 Hb_000062_220 Hb_000062_220 Hb_004994_140--Hb_000062_220 Hb_000866_220 Hb_000866_220 Hb_000189_560--Hb_000866_220 Hb_000189_560--Hb_007532_030 Hb_000185_030 Hb_000185_030 Hb_000189_560--Hb_000185_030 Hb_007508_090 Hb_007508_090 Hb_000189_560--Hb_007508_090 Hb_000710_060 Hb_000710_060 Hb_000189_560--Hb_000710_060 Hb_004355_020 Hb_004355_020 Hb_000189_560--Hb_004355_020 Hb_009178_030 Hb_009178_030 Hb_007532_030--Hb_009178_030 Hb_002218_010 Hb_002218_010 Hb_007532_030--Hb_002218_010 Hb_007532_030--Hb_008725_260 Hb_007532_030--Hb_007508_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.8495 29.2254 8.95997 14.3828 20.7207 16.4943
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.86 33.0556 35.4298 15.1133 8.18507

CAGE analysis