Hb_003376_370

Information

Type -
Description -
Location Contig3376: 242613-245635
Sequence    

Annotation

kegg
ID rcu:RCOM_1355770
description protein binding protein, putative
nr
ID XP_002519530.1
description protein binding protein, putative [Ricinus communis]
swissprot
ID Q9LYW0
description BTB/POZ domain-containing protein At5g03250 OS=Arabidopsis thaliana GN=At5g03250 PE=2 SV=1
trembl
ID B9S0L1
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_1355770 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35363: 245218-245393
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003376_370 0.0 - - protein binding protein, putative [Ricinus communis]
2 Hb_001205_290 0.1863940092 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP7-like [Jatropha curcas]
3 Hb_000270_050 0.194003064 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase FEI 2 [Jatropha curcas]
4 Hb_005916_040 0.201196113 - - PREDICTED: auxin transporter-like protein 5 [Populus euphratica]
5 Hb_012016_050 0.2075799676 - - hypothetical protein JCGZ_09036 [Jatropha curcas]
6 Hb_007617_040 0.2089720398 - - PREDICTED: syntaxin-112-like [Jatropha curcas]
7 Hb_004884_170 0.2111277709 - - hypothetical protein AALP_AA1G067000 [Arabis alpina]
8 Hb_000116_200 0.2123821279 transcription factor TF Family: HMG hypothetical protein POPTR_0005s10440g [Populus trichocarpa]
9 Hb_008406_050 0.2141550075 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 2 [Jatropha curcas]
10 Hb_001621_120 0.2156792201 - - Zeamatin precursor, putative [Ricinus communis]
11 Hb_163989_010 0.2165740758 - - conserved hypothetical protein [Ricinus communis]
12 Hb_007441_140 0.2166014261 - - PREDICTED: cyclin-U4-1 [Jatropha curcas]
13 Hb_000890_120 0.2186109887 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 isoform X1 [Jatropha curcas]
14 Hb_180695_010 0.2218626689 - - hypothetical protein CICLE_v10013449mg [Citrus clementina]
15 Hb_007290_040 0.2228351437 - - PREDICTED: histidine-containing phosphotransfer protein 1-like [Jatropha curcas]
16 Hb_000163_040 0.2231822818 - - PREDICTED: indole-3-acetic acid-induced protein ARG2-like [Jatropha curcas]
17 Hb_000157_020 0.2232220725 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002970_030 0.2234487859 - - conserved hypothetical protein [Ricinus communis]
19 Hb_074419_010 0.2241818693 - - PREDICTED: uncharacterized protein LOC105637596 [Jatropha curcas]
20 Hb_002641_090 0.2247640058 - - PREDICTED: uncharacterized protein LOC105643559 [Jatropha curcas]

Gene co-expression network

sample Hb_003376_370 Hb_003376_370 Hb_001205_290 Hb_001205_290 Hb_003376_370--Hb_001205_290 Hb_000270_050 Hb_000270_050 Hb_003376_370--Hb_000270_050 Hb_005916_040 Hb_005916_040 Hb_003376_370--Hb_005916_040 Hb_012016_050 Hb_012016_050 Hb_003376_370--Hb_012016_050 Hb_007617_040 Hb_007617_040 Hb_003376_370--Hb_007617_040 Hb_004884_170 Hb_004884_170 Hb_003376_370--Hb_004884_170 Hb_001247_060 Hb_001247_060 Hb_001205_290--Hb_001247_060 Hb_012092_040 Hb_012092_040 Hb_001205_290--Hb_012092_040 Hb_001205_290--Hb_000270_050 Hb_002970_030 Hb_002970_030 Hb_001205_290--Hb_002970_030 Hb_000089_090 Hb_000089_090 Hb_001205_290--Hb_000089_090 Hb_089140_070 Hb_089140_070 Hb_001205_290--Hb_089140_070 Hb_000289_020 Hb_000289_020 Hb_000270_050--Hb_000289_020 Hb_004732_070 Hb_004732_070 Hb_000270_050--Hb_004732_070 Hb_003489_010 Hb_003489_010 Hb_000270_050--Hb_003489_010 Hb_002307_150 Hb_002307_150 Hb_000270_050--Hb_002307_150 Hb_005211_170 Hb_005211_170 Hb_000270_050--Hb_005211_170 Hb_000086_510 Hb_000086_510 Hb_005916_040--Hb_000086_510 Hb_180695_010 Hb_180695_010 Hb_005916_040--Hb_180695_010 Hb_001025_100 Hb_001025_100 Hb_005916_040--Hb_001025_100 Hb_000157_020 Hb_000157_020 Hb_005916_040--Hb_000157_020 Hb_000243_340 Hb_000243_340 Hb_005916_040--Hb_000243_340 Hb_002601_040 Hb_002601_040 Hb_005916_040--Hb_002601_040 Hb_128392_010 Hb_128392_010 Hb_012016_050--Hb_128392_010 Hb_005701_100 Hb_005701_100 Hb_012016_050--Hb_005701_100 Hb_000039_080 Hb_000039_080 Hb_012016_050--Hb_000039_080 Hb_000700_020 Hb_000700_020 Hb_012016_050--Hb_000700_020 Hb_012016_050--Hb_001205_290 Hb_012016_050--Hb_001247_060 Hb_007617_040--Hb_012016_050 Hb_000556_130 Hb_000556_130 Hb_007617_040--Hb_000556_130 Hb_007617_040--Hb_128392_010 Hb_021576_050 Hb_021576_050 Hb_007617_040--Hb_021576_050 Hb_003813_110 Hb_003813_110 Hb_007617_040--Hb_003813_110 Hb_007617_040--Hb_001247_060 Hb_012150_040 Hb_012150_040 Hb_004884_170--Hb_012150_040 Hb_001377_370 Hb_001377_370 Hb_004884_170--Hb_001377_370 Hb_000661_150 Hb_000661_150 Hb_004884_170--Hb_000661_150 Hb_001565_090 Hb_001565_090 Hb_004884_170--Hb_001565_090 Hb_000069_650 Hb_000069_650 Hb_004884_170--Hb_000069_650 Hb_001950_090 Hb_001950_090 Hb_004884_170--Hb_001950_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.01328 0.0194638 0.147349 0.303515 0 0.0103792
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0191483 0 0.0304926 0

CAGE analysis