Hb_003376_380

Information

Type -
Description -
Location Contig3376: 248027-252934
Sequence    

Annotation

kegg
ID pop:POPTR_0006s12920g
description hypothetical protein
nr
ID XP_012082366.1
description PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3 [Jatropha curcas]
swissprot
ID Q8L8B8
description Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3 OS=Arabidopsis thaliana GN=LOG3 PE=1 SV=1
trembl
ID A0A067KA04
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16509 PE=4 SV=1
Gene Ontology
ID GO:0016829
description cytokinin riboside 5 -monophosphate phosphoribohydrolase log3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35364: 247984-251956 , PASA_asmbl_35365: 251176-251411
cDNA
(Sanger)
(ID:Location)		 038_H20.ab1: 247997-251952

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003376_380 0.0 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3 [Jatropha curcas]
2 Hb_003398_020 0.1563146357 - - PREDICTED: uncharacterized protein LOC105647439 [Jatropha curcas]
3 Hb_003057_020 0.1887344132 - - 40S ribosomal protein S23, putative [Ricinus communis]
4 Hb_000239_110 0.1895708277 - - PREDICTED: adenine phosphoribosyltransferase 1-like [Jatropha curcas]
5 Hb_002900_130 0.196733757 - - 60S ribosomal L35a-3 -like protein [Gossypium arboreum]
6 Hb_001449_100 0.2010104014 - - PREDICTED: transcription factor bHLH149 [Jatropha curcas]
7 Hb_001623_070 0.2039978189 - - cytochrome B5 isoform 1, putative [Ricinus communis]
8 Hb_000454_180 0.2055902978 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]
9 Hb_001016_080 0.2065136188 - - hypothetical protein EUGRSUZ_J02452 [Eucalyptus grandis]
10 Hb_007313_080 0.2070177561 - - hypothetical protein CICLE_v10002804mg [Citrus clementina]
11 Hb_002526_020 0.2075160095 - - -
12 Hb_011224_040 0.2124635494 - - PREDICTED: ER membrane protein complex subunit 8/9 homolog [Jatropha curcas]
13 Hb_000289_070 0.2160151131 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001266_030 0.2173982334 - - PREDICTED: lipid phosphate phosphatase epsilon 2, chloroplastic-like [Jatropha curcas]
15 Hb_044653_060 0.2225522015 - - PREDICTED: uncharacterized protein LOC105628750 [Jatropha curcas]
16 Hb_001307_210 0.2250833577 - - Os02g0814700 [Oryza sativa Japonica Group]
17 Hb_154141_030 0.2259552737 - - PREDICTED: histone H2AX [Populus euphratica]
18 Hb_002811_090 0.2282325513 - - 40S ribosomal protein S24A [Hevea brasiliensis]
19 Hb_004429_110 0.2339959642 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
20 Hb_043623_010 0.2392767391 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-2 [Jatropha curcas]

Gene co-expression network

sample Hb_003376_380 Hb_003376_380 Hb_003398_020 Hb_003398_020 Hb_003376_380--Hb_003398_020 Hb_003057_020 Hb_003057_020 Hb_003376_380--Hb_003057_020 Hb_000239_110 Hb_000239_110 Hb_003376_380--Hb_000239_110 Hb_002900_130 Hb_002900_130 Hb_003376_380--Hb_002900_130 Hb_001449_100 Hb_001449_100 Hb_003376_380--Hb_001449_100 Hb_001623_070 Hb_001623_070 Hb_003376_380--Hb_001623_070 Hb_003398_020--Hb_000239_110 Hb_004429_110 Hb_004429_110 Hb_003398_020--Hb_004429_110 Hb_007313_080 Hb_007313_080 Hb_003398_020--Hb_007313_080 Hb_003398_020--Hb_002900_130 Hb_003398_020--Hb_001449_100 Hb_002811_090 Hb_002811_090 Hb_003057_020--Hb_002811_090 Hb_000212_210 Hb_000212_210 Hb_003057_020--Hb_000212_210 Hb_000454_180 Hb_000454_180 Hb_003057_020--Hb_000454_180 Hb_027472_160 Hb_027472_160 Hb_003057_020--Hb_027472_160 Hb_001789_050 Hb_001789_050 Hb_003057_020--Hb_001789_050 Hb_007120_090 Hb_007120_090 Hb_003057_020--Hb_007120_090 Hb_005725_100 Hb_005725_100 Hb_000239_110--Hb_005725_100 Hb_042871_010 Hb_042871_010 Hb_000239_110--Hb_042871_010 Hb_000239_110--Hb_004429_110 Hb_000500_210 Hb_000500_210 Hb_000239_110--Hb_000500_210 Hb_154141_030 Hb_154141_030 Hb_002900_130--Hb_154141_030 Hb_000768_130 Hb_000768_130 Hb_002900_130--Hb_000768_130 Hb_002900_130--Hb_007313_080 Hb_001635_130 Hb_001635_130 Hb_002900_130--Hb_001635_130 Hb_003020_330 Hb_003020_330 Hb_002900_130--Hb_003020_330 Hb_000739_140 Hb_000739_140 Hb_002900_130--Hb_000739_140 Hb_028271_020 Hb_028271_020 Hb_001449_100--Hb_028271_020 Hb_004679_060 Hb_004679_060 Hb_001449_100--Hb_004679_060 Hb_002784_100 Hb_002784_100 Hb_001449_100--Hb_002784_100 Hb_011609_110 Hb_011609_110 Hb_001449_100--Hb_011609_110 Hb_007017_010 Hb_007017_010 Hb_001449_100--Hb_007017_010 Hb_002890_070 Hb_002890_070 Hb_001623_070--Hb_002890_070 Hb_001623_070--Hb_003398_020 Hb_001439_090 Hb_001439_090 Hb_001623_070--Hb_001439_090 Hb_001623_070--Hb_011609_110 Hb_001623_070--Hb_042871_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.340198 0.353911 2.16169 2.30666 0.047234 0.697981
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.45085 20.2285 0.581365 2.56629 2.5829

CAGE analysis