Hb_003376_390

Information

Type -
Description -
Location Contig3376: 265754-268948
Sequence    

Annotation

kegg
ID rcu:RCOM_1355620
description ribonucleoprotein, chloroplast, putative
nr
ID XP_012082369.1
description PREDICTED: 29 kDa ribonucleoprotein A, chloroplastic [Jatropha curcas]
swissprot
ID Q9ZUU4
description RNA-binding protein CP29B, chloroplastic OS=Arabidopsis thaliana GN=CP29B PE=1 SV=1
trembl
ID A0A067JYS9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16510 PE=4 SV=1
Gene Ontology
ID GO:0019013
description 29 kda ribonucleoprotein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35366: 266513-268965
cDNA
(Sanger)
(ID:Location)		 015_D18.ab1: 267772-268965

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003376_390 0.0 - - PREDICTED: 29 kDa ribonucleoprotein A, chloroplastic [Jatropha curcas]
2 Hb_004871_010 0.0682683414 - - RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
3 Hb_002928_030 0.0895161942 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
4 Hb_001649_030 0.0904981957 - - PREDICTED: peptide deformylase 1B, chloroplastic [Jatropha curcas]
5 Hb_172632_060 0.093397683 - - PREDICTED: uncharacterized protein LOC105646135 isoform X1 [Jatropha curcas]
6 Hb_000358_040 0.0970006606 - - PREDICTED: probable plastid-lipid-associated protein 4, chloroplastic [Jatropha curcas]
7 Hb_000574_470 0.1042133801 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X1 [Jatropha curcas]
8 Hb_000260_710 0.1061308062 - - PREDICTED: uncharacterized protein LOC105649017 isoform X1 [Jatropha curcas]
9 Hb_001959_060 0.1149451425 - - PREDICTED: carboxyl-terminal-processing peptidase 2, chloroplastic [Jatropha curcas]
10 Hb_000665_270 0.1152904312 - - PREDICTED: adenine phosphoribosyltransferase 5 [Jatropha curcas]
11 Hb_027445_100 0.1183969278 - - PREDICTED: probable monodehydroascorbate reductase, cytoplasmic isoform 2 [Jatropha curcas]
12 Hb_009288_040 0.1199301853 - - PREDICTED: uncharacterized protein LOC105648677 [Jatropha curcas]
13 Hb_005618_080 0.1210570832 - - PREDICTED: protoporphyrinogen oxidase 1, chloroplastic [Jatropha curcas]
14 Hb_000402_020 0.1223054361 - - PREDICTED: 2-phytyl-1,4-beta-naphthoquinone methyltransferase, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_004117_040 0.1224370618 - - PREDICTED: uncharacterized protein LOC105638287 [Jatropha curcas]
16 Hb_005116_100 0.1231428574 - - PREDICTED: uncharacterized protein LOC105649999 [Jatropha curcas]
17 Hb_000331_340 0.1246757481 - - PREDICTED: uncharacterized protein LOC105640234 [Jatropha curcas]
18 Hb_148146_010 0.1253417083 - - coproporphyrinogen III oxidase [Ziziphus jujuba]
19 Hb_006787_090 0.1255202567 - - PREDICTED: uncharacterized protein LOC105646282 [Jatropha curcas]
20 Hb_005618_150 0.1275189093 - - PREDICTED: protein translocase subunit SecA, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_003376_390 Hb_003376_390 Hb_004871_010 Hb_004871_010 Hb_003376_390--Hb_004871_010 Hb_002928_030 Hb_002928_030 Hb_003376_390--Hb_002928_030 Hb_001649_030 Hb_001649_030 Hb_003376_390--Hb_001649_030 Hb_172632_060 Hb_172632_060 Hb_003376_390--Hb_172632_060 Hb_000358_040 Hb_000358_040 Hb_003376_390--Hb_000358_040 Hb_000574_470 Hb_000574_470 Hb_003376_390--Hb_000574_470 Hb_000260_710 Hb_000260_710 Hb_004871_010--Hb_000260_710 Hb_000976_190 Hb_000976_190 Hb_004871_010--Hb_000976_190 Hb_006787_090 Hb_006787_090 Hb_004871_010--Hb_006787_090 Hb_004871_010--Hb_002928_030 Hb_001959_060 Hb_001959_060 Hb_004871_010--Hb_001959_060 Hb_002928_030--Hb_001649_030 Hb_002928_030--Hb_000358_040 Hb_004629_030 Hb_004629_030 Hb_002928_030--Hb_004629_030 Hb_025194_090 Hb_025194_090 Hb_002928_030--Hb_025194_090 Hb_001269_500 Hb_001269_500 Hb_001649_030--Hb_001269_500 Hb_000665_270 Hb_000665_270 Hb_001649_030--Hb_000665_270 Hb_003752_090 Hb_003752_090 Hb_001649_030--Hb_003752_090 Hb_001649_030--Hb_000358_040 Hb_172632_060--Hb_000574_470 Hb_172632_060--Hb_001959_060 Hb_005618_080 Hb_005618_080 Hb_172632_060--Hb_005618_080 Hb_172632_060--Hb_004871_010 Hb_004117_040 Hb_004117_040 Hb_172632_060--Hb_004117_040 Hb_000358_040--Hb_004629_030 Hb_000358_040--Hb_000260_710 Hb_000482_050 Hb_000482_050 Hb_000358_040--Hb_000482_050 Hb_011476_030 Hb_011476_030 Hb_000574_470--Hb_011476_030 Hb_000574_470--Hb_005618_080 Hb_000212_250 Hb_000212_250 Hb_000574_470--Hb_000212_250 Hb_000574_470--Hb_001959_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.19681 16.1747 46.5986 12.7848 8.59783 10.8129
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.80768 9.5566 3.66381 5.30074 51.6857

CAGE analysis