Hb_003384_030

Information

Type -
Description -
Location Contig3384: 56314-63332
Sequence    

Annotation

kegg
ID vvi:100263785
description eukaryotic translation initiation factor 2 subunit beta
nr
ID XP_012077930.1
description PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like [Jatropha curcas]
swissprot
ID P55871
description Eukaryotic translation initiation factor 2 subunit beta OS=Malus domestica PE=2 SV=2
trembl
ID A0A067LMN9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17291 PE=4 SV=1
Gene Ontology
ID GO:0003743
description eukaryotic translation initiation factor 2 subunit beta

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35392: 56326-63409 , PASA_asmbl_35393: 56331-57481
cDNA
(Sanger)
(ID:Location)		 002_I13.ab1: 56336-57206

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003384_030 0.0 - - PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like [Jatropha curcas]
2 Hb_000001_180 0.0448017269 - - PREDICTED: uncharacterized protein LOC105648978 [Jatropha curcas]
3 Hb_000462_150 0.0463044233 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Jatropha curcas]
4 Hb_005914_230 0.0537331383 - - PREDICTED: pre-mRNA-processing factor 19 homolog 1 [Jatropha curcas]
5 Hb_002818_040 0.055237357 - - tRNA synthetase-related family protein [Populus trichocarpa]
6 Hb_018663_020 0.0612432008 - - PREDICTED: nuclear pore complex protein NUP1 isoform X2 [Jatropha curcas]
7 Hb_001969_040 0.0619652834 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
8 Hb_001504_160 0.0624824734 - - PREDICTED: nuclear pore complex protein NUP96 [Jatropha curcas]
9 Hb_000076_080 0.063273377 - - PREDICTED: protein MOS2 [Jatropha curcas]
10 Hb_012305_070 0.0668333069 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004678_020 0.0684448978 - - PREDICTED: protein YIF1B [Jatropha curcas]
12 Hb_004724_360 0.0708082982 - - OTU-like cysteine protease family protein [Populus trichocarpa]
13 Hb_000340_510 0.0724564536 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]
14 Hb_000236_320 0.0724843432 - - PREDICTED: ER membrane protein complex subunit 8/9 homolog [Jatropha curcas]
15 Hb_000230_330 0.0726406172 - - PREDICTED: calcium-binding protein 39-like [Populus euphratica]
16 Hb_002725_070 0.0736442662 - - hypothetical protein PRUPE_ppa005949mg [Prunus persica]
17 Hb_000684_420 0.0748798821 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
18 Hb_000186_280 0.0760094453 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
19 Hb_012654_010 0.0774293381 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105629849 [Jatropha curcas]
20 Hb_042083_070 0.0783933019 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]

Gene co-expression network

sample Hb_003384_030 Hb_003384_030 Hb_000001_180 Hb_000001_180 Hb_003384_030--Hb_000001_180 Hb_000462_150 Hb_000462_150 Hb_003384_030--Hb_000462_150 Hb_005914_230 Hb_005914_230 Hb_003384_030--Hb_005914_230 Hb_002818_040 Hb_002818_040 Hb_003384_030--Hb_002818_040 Hb_018663_020 Hb_018663_020 Hb_003384_030--Hb_018663_020 Hb_001969_040 Hb_001969_040 Hb_003384_030--Hb_001969_040 Hb_000001_180--Hb_002818_040 Hb_004724_360 Hb_004724_360 Hb_000001_180--Hb_004724_360 Hb_000001_180--Hb_005914_230 Hb_005314_010 Hb_005314_010 Hb_000001_180--Hb_005314_010 Hb_004678_020 Hb_004678_020 Hb_000001_180--Hb_004678_020 Hb_000462_150--Hb_001969_040 Hb_000462_150--Hb_002818_040 Hb_000230_330 Hb_000230_330 Hb_000462_150--Hb_000230_330 Hb_001584_110 Hb_001584_110 Hb_000462_150--Hb_001584_110 Hb_000462_150--Hb_000001_180 Hb_005914_230--Hb_018663_020 Hb_008725_250 Hb_008725_250 Hb_005914_230--Hb_008725_250 Hb_004310_060 Hb_004310_060 Hb_005914_230--Hb_004310_060 Hb_005147_110 Hb_005147_110 Hb_005914_230--Hb_005147_110 Hb_000340_510 Hb_000340_510 Hb_002818_040--Hb_000340_510 Hb_002818_040--Hb_005314_010 Hb_002818_040--Hb_005914_230 Hb_001226_180 Hb_001226_180 Hb_018663_020--Hb_001226_180 Hb_018663_020--Hb_001969_040 Hb_000318_140 Hb_000318_140 Hb_018663_020--Hb_000318_140 Hb_001009_050 Hb_001009_050 Hb_018663_020--Hb_001009_050 Hb_000186_280 Hb_000186_280 Hb_001969_040--Hb_000186_280 Hb_004324_280 Hb_004324_280 Hb_001969_040--Hb_004324_280 Hb_001969_040--Hb_002818_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
161.347 56.1281 32.7993 28.3237 189.378 186.24
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
94.447 65.0505 78.098 45.7549 18.4869

CAGE analysis