Hb_003385_090

Information

Type -
Description -
Location Contig3385: 63996-67327
Sequence    

Annotation

kegg
ID rcu:RCOM_0685770
description serine-threonine protein kinase, plant-type, putative (EC:2.7.11.23 1.3.1.74)
nr
ID KDP46929.1
description hypothetical protein JCGZ_08917 [Jatropha curcas]
swissprot
ID C0LGP4
description Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=2 SV=1
trembl
ID A0A067LQQ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08917 PE=4 SV=1
Gene Ontology
ID GO:0016020
description receptor-like protein kinase at3g47110

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003385_090 0.0 - - hypothetical protein JCGZ_08917 [Jatropha curcas]
2 Hb_000535_030 0.058760972 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
3 Hb_032651_060 0.0599743428 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_007666_040 0.0878664264 - - PREDICTED: ent-kaur-16-ene synthase, chloroplastic-like [Jatropha curcas]
5 Hb_001080_040 0.0927640877 - - cytochrome P450, putative [Ricinus communis]
6 Hb_049562_010 0.09333897 - - hypothetical protein JCGZ_25442 [Jatropha curcas]
7 Hb_001114_210 0.094242864 - - PREDICTED: periaxin [Jatropha curcas]
8 Hb_003117_060 0.0998858343 - - PREDICTED: cytochrome P450 83B1-like [Jatropha curcas]
9 Hb_001363_010 0.1005273906 - - hypothetical protein CISIN_1g027763mg [Citrus sinensis]
10 Hb_005649_120 0.1031606655 - - Anthocyanin 5-aromatic acyltransferase, putative [Ricinus communis]
11 Hb_001376_040 0.1110920332 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Populus euphratica]
12 Hb_008062_020 0.1134607721 - - PREDICTED: periaxin-like [Populus euphratica]
13 Hb_135811_020 0.1135277605 - - hypothetical protein JCGZ_19965 [Jatropha curcas]
14 Hb_000031_130 0.1137831014 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Populus euphratica]
15 Hb_169388_010 0.1167308739 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
16 Hb_002154_090 0.1200026783 - - -
17 Hb_175426_010 0.1201051522 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
18 Hb_000238_010 0.1201970275 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_154646_010 0.123272944 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
20 Hb_001817_070 0.124011634 - - nucleic acid binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_003385_090 Hb_003385_090 Hb_000535_030 Hb_000535_030 Hb_003385_090--Hb_000535_030 Hb_032651_060 Hb_032651_060 Hb_003385_090--Hb_032651_060 Hb_007666_040 Hb_007666_040 Hb_003385_090--Hb_007666_040 Hb_001080_040 Hb_001080_040 Hb_003385_090--Hb_001080_040 Hb_049562_010 Hb_049562_010 Hb_003385_090--Hb_049562_010 Hb_001114_210 Hb_001114_210 Hb_003385_090--Hb_001114_210 Hb_000535_030--Hb_007666_040 Hb_003117_060 Hb_003117_060 Hb_000535_030--Hb_003117_060 Hb_000535_030--Hb_032651_060 Hb_000535_030--Hb_001114_210 Hb_000535_030--Hb_001080_040 Hb_032651_060--Hb_049562_010 Hb_032651_060--Hb_001080_040 Hb_001363_010 Hb_001363_010 Hb_032651_060--Hb_001363_010 Hb_005649_120 Hb_005649_120 Hb_032651_060--Hb_005649_120 Hb_007666_040--Hb_003117_060 Hb_012053_030 Hb_012053_030 Hb_007666_040--Hb_012053_030 Hb_007666_040--Hb_001114_210 Hb_001489_030 Hb_001489_030 Hb_007666_040--Hb_001489_030 Hb_001080_040--Hb_049562_010 Hb_039814_010 Hb_039814_010 Hb_001080_040--Hb_039814_010 Hb_154646_010 Hb_154646_010 Hb_001080_040--Hb_154646_010 Hb_001817_070 Hb_001817_070 Hb_001080_040--Hb_001817_070 Hb_000135_040 Hb_000135_040 Hb_001080_040--Hb_000135_040 Hb_008953_020 Hb_008953_020 Hb_001080_040--Hb_008953_020 Hb_049562_010--Hb_005649_120 Hb_175426_010 Hb_175426_010 Hb_049562_010--Hb_175426_010 Hb_002154_090 Hb_002154_090 Hb_049562_010--Hb_002154_090 Hb_000238_010 Hb_000238_010 Hb_049562_010--Hb_000238_010 Hb_007627_020 Hb_007627_020 Hb_049562_010--Hb_007627_020 Hb_001376_040 Hb_001376_040 Hb_001114_210--Hb_001376_040 Hb_000031_130 Hb_000031_130 Hb_001114_210--Hb_000031_130 Hb_001114_210--Hb_049562_010 Hb_001114_210--Hb_005649_120 Hb_001114_210--Hb_001080_040 Hb_008062_020 Hb_008062_020 Hb_001114_210--Hb_008062_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 4.57838 0.0491592 0.071326 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.64104 0.0895207

CAGE analysis