Hb_003387_050

Information

Type -
Description -
Location Contig3387: 58516-64102
Sequence    

Annotation

kegg
ID mdm:103400534
description uncharacterized LOC103400534
nr
ID XP_012078733.1
description PREDICTED: uncharacterized protein LOC105639324 [Jatropha curcas]
swissprot
ID Q05609
description Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana GN=CTR1 PE=1 SV=1
trembl
ID A0A067K803
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13291 PE=4 SV=1
Gene Ontology
ID GO:0004672
description serine threonine protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003387_050 0.0 - - PREDICTED: uncharacterized protein LOC105639324 [Jatropha curcas]
2 Hb_000002_360 0.1318412914 - - hypothetical protein POPTR_0008s16470g [Populus trichocarpa]
3 Hb_001221_290 0.1543722635 - - hypothetical protein RCOM_1506010 [Ricinus communis]
4 Hb_080477_080 0.1723215449 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 isoform X1 [Gossypium raimondii]
5 Hb_005054_020 0.1740316044 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g11320 [Jatropha curcas]
6 Hb_000866_320 0.1824180519 - - receptor protein kinase, putative [Ricinus communis]
7 Hb_120117_010 0.1825943961 - - Disease resistance protein RFL1, putative [Ricinus communis]
8 Hb_122940_010 0.1840899788 - - PREDICTED: 2-isopropylmalate synthase 2, chloroplastic-like [Populus euphratica]
9 Hb_000975_200 0.1865885389 - - PREDICTED: uncharacterized protein LOC105628231 isoform X2 [Jatropha curcas]
10 Hb_002999_080 0.1884820877 transcription factor TF Family: G2-like PREDICTED: accessory gland protein Acp36DE [Jatropha curcas]
11 Hb_001898_140 0.1885345508 - - hypothetical protein AMTR_s00071p00184460 [Amborella trichopoda]
12 Hb_002000_090 0.1896260208 - - 60S ribosomal protein L3B [Hevea brasiliensis]
13 Hb_001493_140 0.1900588991 - - hypothetical protein PHAVU_010G123100g [Phaseolus vulgaris]
14 Hb_003710_020 0.1903919513 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X1 [Jatropha curcas]
15 Hb_005784_060 0.1958833382 - - PREDICTED: U-box domain-containing protein 28 [Jatropha curcas]
16 Hb_000028_580 0.1962875728 - - PREDICTED: glutamate decarboxylase 5-like [Jatropha curcas]
17 Hb_000365_280 0.1971753874 - - calcium binding protein/cast, putative [Ricinus communis]
18 Hb_001178_090 0.1977010589 - - Monodehydroascorbate reductase family protein [Populus trichocarpa]
19 Hb_000540_040 0.1994283962 - - PREDICTED: chitinase 2 [Amborella trichopoda]
20 Hb_034507_090 0.2004356335 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_003387_050 Hb_003387_050 Hb_000002_360 Hb_000002_360 Hb_003387_050--Hb_000002_360 Hb_001221_290 Hb_001221_290 Hb_003387_050--Hb_001221_290 Hb_080477_080 Hb_080477_080 Hb_003387_050--Hb_080477_080 Hb_005054_020 Hb_005054_020 Hb_003387_050--Hb_005054_020 Hb_000866_320 Hb_000866_320 Hb_003387_050--Hb_000866_320 Hb_120117_010 Hb_120117_010 Hb_003387_050--Hb_120117_010 Hb_026549_050 Hb_026549_050 Hb_000002_360--Hb_026549_050 Hb_000832_280 Hb_000832_280 Hb_000002_360--Hb_000832_280 Hb_000002_360--Hb_000866_320 Hb_001433_160 Hb_001433_160 Hb_000002_360--Hb_001433_160 Hb_001922_060 Hb_001922_060 Hb_000002_360--Hb_001922_060 Hb_000365_280 Hb_000365_280 Hb_001221_290--Hb_000365_280 Hb_003001_130 Hb_003001_130 Hb_001221_290--Hb_003001_130 Hb_002173_030 Hb_002173_030 Hb_001221_290--Hb_002173_030 Hb_000479_060 Hb_000479_060 Hb_001221_290--Hb_000479_060 Hb_003929_230 Hb_003929_230 Hb_001221_290--Hb_003929_230 Hb_003710_020 Hb_003710_020 Hb_080477_080--Hb_003710_020 Hb_158092_040 Hb_158092_040 Hb_080477_080--Hb_158092_040 Hb_004522_030 Hb_004522_030 Hb_080477_080--Hb_004522_030 Hb_143766_080 Hb_143766_080 Hb_080477_080--Hb_143766_080 Hb_001054_090 Hb_001054_090 Hb_080477_080--Hb_001054_090 Hb_000062_530 Hb_000062_530 Hb_080477_080--Hb_000062_530 Hb_000028_430 Hb_000028_430 Hb_005054_020--Hb_000028_430 Hb_000928_120 Hb_000928_120 Hb_005054_020--Hb_000928_120 Hb_002325_060 Hb_002325_060 Hb_005054_020--Hb_002325_060 Hb_003849_190 Hb_003849_190 Hb_005054_020--Hb_003849_190 Hb_005054_020--Hb_000365_280 Hb_000056_080 Hb_000056_080 Hb_005054_020--Hb_000056_080 Hb_009627_020 Hb_009627_020 Hb_000866_320--Hb_009627_020 Hb_007625_030 Hb_007625_030 Hb_000866_320--Hb_007625_030 Hb_009838_120 Hb_009838_120 Hb_000866_320--Hb_009838_120 Hb_002999_080 Hb_002999_080 Hb_000866_320--Hb_002999_080 Hb_004659_100 Hb_004659_100 Hb_000866_320--Hb_004659_100 Hb_008643_020 Hb_008643_020 Hb_120117_010--Hb_008643_020 Hb_001277_420 Hb_001277_420 Hb_120117_010--Hb_001277_420 Hb_038718_010 Hb_038718_010 Hb_120117_010--Hb_038718_010 Hb_010642_010 Hb_010642_010 Hb_120117_010--Hb_010642_010 Hb_004297_080 Hb_004297_080 Hb_120117_010--Hb_004297_080 Hb_000128_090 Hb_000128_090 Hb_120117_010--Hb_000128_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.114505 0.0687258 0.300463 0 0.0153511
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0128238 0.0201833 0.0193399 0.0800011 0.0431492

CAGE analysis