Hb_003387_060

Information

Type -
Description -
Location Contig3387: 69369-72424
Sequence    

Annotation

kegg
ID rcu:RCOM_0220620
description hypothetical protein
nr
ID XP_002524445.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q93VG8
description DeSI-like protein At4g17486 OS=Arabidopsis thaliana GN=At4g17486 PE=2 SV=1
trembl
ID B9SEM6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0220620 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35402: 69553-70426 , PASA_asmbl_35403: 69407-72486 , PASA_asmbl_35404: 71017-71244
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003387_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_007304_120 0.0649168059 - - NAD(P)-binding Rossmann-fold superfamily protein isoform 1 [Theobroma cacao]
3 Hb_014720_120 0.0838009694 - - Phosphoenolpyruvate/phosphate translocator 1, chloroplastic -like protein [Gossypium arboreum]
4 Hb_012286_030 0.0858511903 transcription factor TF Family: MED7 PREDICTED: mediator of RNA polymerase II transcription subunit 7a [Solanum lycopersicum]
5 Hb_002245_030 0.0859151102 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
6 Hb_000220_040 0.0929092978 - - conserved hypothetical protein [Ricinus communis]
7 Hb_008511_120 0.0931435372 - - NADH-ubiquinone oxidoreductase 1, chain, putative [Ricinus communis]
8 Hb_000032_270 0.0932492433 - - PREDICTED: F-box/LRR-repeat protein 13 [Jatropha curcas]
9 Hb_011344_210 0.095808712 - - PREDICTED: probable calcium-binding protein CML13 [Jatropha curcas]
10 Hb_000580_090 0.09668362 - - PREDICTED: tRNA 2'-phosphotransferase 1 isoform X1 [Jatropha curcas]
11 Hb_021419_030 0.0967739706 - - hypothetical protein glysoja_023295 [Glycine soja]
12 Hb_000563_320 0.097587635 - - PREDICTED: induced during hyphae development protein 1 [Jatropha curcas]
13 Hb_001481_170 0.0981467472 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000915_180 0.1003823648 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Pyrus x bretschneideri]
15 Hb_000521_320 0.1006721026 - - hypothetical protein POPTR_0001s23520g [Populus trichocarpa]
16 Hb_003001_080 0.1016986382 - - PREDICTED: uncharacterized protein LOC105644363 [Jatropha curcas]
17 Hb_000580_180 0.1019532583 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000732_010 0.103228479 - - PREDICTED: nitric oxide synthase-interacting protein [Pyrus x bretschneideri]
19 Hb_002311_180 0.1038184412 - - drought-responsive family protein [Populus trichocarpa]
20 Hb_000465_160 0.1039095721 - - PREDICTED: uncharacterized protein LOC105632297 [Jatropha curcas]

Gene co-expression network

sample Hb_003387_060 Hb_003387_060 Hb_007304_120 Hb_007304_120 Hb_003387_060--Hb_007304_120 Hb_014720_120 Hb_014720_120 Hb_003387_060--Hb_014720_120 Hb_012286_030 Hb_012286_030 Hb_003387_060--Hb_012286_030 Hb_002245_030 Hb_002245_030 Hb_003387_060--Hb_002245_030 Hb_000220_040 Hb_000220_040 Hb_003387_060--Hb_000220_040 Hb_008511_120 Hb_008511_120 Hb_003387_060--Hb_008511_120 Hb_000336_150 Hb_000336_150 Hb_007304_120--Hb_000336_150 Hb_007304_120--Hb_012286_030 Hb_002016_150 Hb_002016_150 Hb_007304_120--Hb_002016_150 Hb_010368_010 Hb_010368_010 Hb_007304_120--Hb_010368_010 Hb_000732_010 Hb_000732_010 Hb_007304_120--Hb_000732_010 Hb_000220_010 Hb_000220_010 Hb_014720_120--Hb_000220_010 Hb_014720_120--Hb_002245_030 Hb_120410_010 Hb_120410_010 Hb_014720_120--Hb_120410_010 Hb_000086_170 Hb_000086_170 Hb_014720_120--Hb_000086_170 Hb_010381_090 Hb_010381_090 Hb_014720_120--Hb_010381_090 Hb_007878_010 Hb_007878_010 Hb_014720_120--Hb_007878_010 Hb_000527_060 Hb_000527_060 Hb_012286_030--Hb_000527_060 Hb_000580_090 Hb_000580_090 Hb_012286_030--Hb_000580_090 Hb_004109_170 Hb_004109_170 Hb_012286_030--Hb_004109_170 Hb_000676_180 Hb_000676_180 Hb_012286_030--Hb_000676_180 Hb_004116_190 Hb_004116_190 Hb_012286_030--Hb_004116_190 Hb_005846_040 Hb_005846_040 Hb_012286_030--Hb_005846_040 Hb_002245_030--Hb_000220_010 Hb_000796_210 Hb_000796_210 Hb_002245_030--Hb_000796_210 Hb_005730_120 Hb_005730_120 Hb_002245_030--Hb_005730_120 Hb_002601_110 Hb_002601_110 Hb_002245_030--Hb_002601_110 Hb_007423_040 Hb_007423_040 Hb_002245_030--Hb_007423_040 Hb_002296_050 Hb_002296_050 Hb_000220_040--Hb_002296_050 Hb_000144_100 Hb_000144_100 Hb_000220_040--Hb_000144_100 Hb_000275_170 Hb_000275_170 Hb_000220_040--Hb_000275_170 Hb_003125_200 Hb_003125_200 Hb_000220_040--Hb_003125_200 Hb_004032_430 Hb_004032_430 Hb_000220_040--Hb_004032_430 Hb_000220_040--Hb_000796_210 Hb_032808_010 Hb_032808_010 Hb_008511_120--Hb_032808_010 Hb_005271_220 Hb_005271_220 Hb_008511_120--Hb_005271_220 Hb_002232_410 Hb_002232_410 Hb_008511_120--Hb_002232_410 Hb_003918_010 Hb_003918_010 Hb_008511_120--Hb_003918_010 Hb_000521_320 Hb_000521_320 Hb_008511_120--Hb_000521_320 Hb_005357_080 Hb_005357_080 Hb_008511_120--Hb_005357_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.96134 6.07754 6.95186 6.61103 9.38278 5.36953
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.21321 8.45586 7.45005 3.6653 3.71743

CAGE analysis