Hb_003387_070

Information

Type -
Description -
Location Contig3387: 72795-78767
Sequence    

Annotation

kegg
ID rcu:RCOM_0220610
description Acyl-protein thioesterase, putative (EC:3.1.1.1)
nr
ID XP_002524444.1
description Acyl-protein thioesterase, putative [Ricinus communis]
swissprot
ID O95372
description Acyl-protein thioesterase 2 OS=Homo sapiens GN=LYPLA2 PE=1 SV=1
trembl
ID B9SEM5
description Acyl-protein thioesterase, putative OS=Ricinus communis GN=RCOM_0220610 PE=4 SV=1
Gene Ontology
ID GO:0004622
description acyl-protein thioesterase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35405: 73013-78574
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003387_070 0.0 - - Acyl-protein thioesterase, putative [Ricinus communis]
2 Hb_027459_020 0.0606269079 - - phosphoglycerate mutase, putative [Ricinus communis]
3 Hb_001728_060 0.0938311645 - - PREDICTED: uncharacterized protein LOC105632289 [Jatropha curcas]
4 Hb_017225_020 0.1026335061 - - PREDICTED: protein BRICK 1 [Gossypium raimondii]
5 Hb_002613_020 0.103561735 - - ADP-ribose pyrophosphatase, putative [Ricinus communis]
6 Hb_027654_050 0.1042555932 - - PREDICTED: uncharacterized protein LOC105646592 [Jatropha curcas]
7 Hb_000159_130 0.1048157514 - - RNA binding protein, putative [Ricinus communis]
8 Hb_000016_080 0.1076823813 - - PREDICTED: uncharacterized protein LOC105648533 [Jatropha curcas]
9 Hb_000431_070 0.1092975334 - - Mitochondrial import receptor subunit TOM20, putative [Ricinus communis]
10 Hb_005446_010 0.1112841473 - - PREDICTED: zinc finger protein 830 [Jatropha curcas]
11 Hb_002111_040 0.1130627811 - - hypothetical protein JCGZ_16989 [Jatropha curcas]
12 Hb_024650_070 0.1154651057 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 7 homolog A-like [Jatropha curcas]
13 Hb_003622_040 0.115779176 - - PREDICTED: mitochondrial fission 1 protein A [Jatropha curcas]
14 Hb_014720_110 0.120594212 - - PREDICTED: GDSL esterase/lipase At5g62930 [Tarenaya hassleriana]
15 Hb_001019_150 0.1214434471 - - Acyl-protein thioesterase, putative [Ricinus communis]
16 Hb_005054_210 0.1218767108 - - hypothetical protein PRUPE_ppa026456mg [Prunus persica]
17 Hb_000789_230 0.1219572086 - - PREDICTED: AP-4 complex subunit sigma [Jatropha curcas]
18 Hb_003622_030 0.1222122849 - - PREDICTED: HAUS augmin-like complex subunit 1 [Jatropha curcas]
19 Hb_002872_050 0.1228843909 - - PREDICTED: thioredoxin-like 3-2, chloroplastic [Jatropha curcas]
20 Hb_011512_040 0.1234414461 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Jatropha curcas]

Gene co-expression network

sample Hb_003387_070 Hb_003387_070 Hb_027459_020 Hb_027459_020 Hb_003387_070--Hb_027459_020 Hb_001728_060 Hb_001728_060 Hb_003387_070--Hb_001728_060 Hb_017225_020 Hb_017225_020 Hb_003387_070--Hb_017225_020 Hb_002613_020 Hb_002613_020 Hb_003387_070--Hb_002613_020 Hb_027654_050 Hb_027654_050 Hb_003387_070--Hb_027654_050 Hb_000159_130 Hb_000159_130 Hb_003387_070--Hb_000159_130 Hb_027459_020--Hb_002613_020 Hb_027459_020--Hb_000159_130 Hb_027459_020--Hb_001728_060 Hb_000431_070 Hb_000431_070 Hb_027459_020--Hb_000431_070 Hb_027459_020--Hb_017225_020 Hb_001728_060--Hb_000159_130 Hb_000016_080 Hb_000016_080 Hb_001728_060--Hb_000016_080 Hb_001575_060 Hb_001575_060 Hb_001728_060--Hb_001575_060 Hb_001006_020 Hb_001006_020 Hb_001728_060--Hb_001006_020 Hb_000107_150 Hb_000107_150 Hb_001728_060--Hb_000107_150 Hb_011457_050 Hb_011457_050 Hb_001728_060--Hb_011457_050 Hb_005446_010 Hb_005446_010 Hb_017225_020--Hb_005446_010 Hb_017225_020--Hb_027654_050 Hb_007576_170 Hb_007576_170 Hb_017225_020--Hb_007576_170 Hb_000329_200 Hb_000329_200 Hb_017225_020--Hb_000329_200 Hb_010361_010 Hb_010361_010 Hb_017225_020--Hb_010361_010 Hb_028872_080 Hb_028872_080 Hb_017225_020--Hb_028872_080 Hb_002613_020--Hb_000431_070 Hb_007065_010 Hb_007065_010 Hb_002613_020--Hb_007065_010 Hb_087749_010 Hb_087749_010 Hb_002613_020--Hb_087749_010 Hb_002613_020--Hb_000016_080 Hb_002613_020--Hb_007576_170 Hb_033153_060 Hb_033153_060 Hb_002613_020--Hb_033153_060 Hb_001776_160 Hb_001776_160 Hb_027654_050--Hb_001776_160 Hb_001512_080 Hb_001512_080 Hb_027654_050--Hb_001512_080 Hb_002110_200 Hb_002110_200 Hb_027654_050--Hb_002110_200 Hb_001904_090 Hb_001904_090 Hb_027654_050--Hb_001904_090 Hb_000254_050 Hb_000254_050 Hb_027654_050--Hb_000254_050 Hb_000159_130--Hb_001006_020 Hb_000289_110 Hb_000289_110 Hb_000159_130--Hb_000289_110 Hb_000159_130--Hb_000107_150 Hb_003020_260 Hb_003020_260 Hb_000159_130--Hb_003020_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.07794 2.66632 14.4561 14.7306 12.2884 7.92938
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.1546 27.4837 20.5203 19.6402 19.5387

CAGE analysis