Hb_003388_050

Information

Type -
Description -
Location Contig3388: 34415-38957
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35411: 19745-68798 , PASA_asmbl_35416: 35832-36015
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003388_050 0.0 - - -
2 Hb_018790_070 0.0982933301 - - PREDICTED: uncharacterized protein LOC105650163 [Jatropha curcas]
3 Hb_050847_020 0.1050783885 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
4 Hb_001102_080 0.109554134 - - PREDICTED: anaphase-promoting complex subunit 4 [Jatropha curcas]
5 Hb_000270_460 0.1133188381 - - PREDICTED: anaphase-promoting complex subunit 8 [Jatropha curcas]
6 Hb_000011_360 0.1137318777 - - PREDICTED: translation initiation factor eIF-2B subunit alpha-like [Fragaria vesca subsp. vesca]
7 Hb_002045_150 0.1193874633 - - histone acetyltransferase gcn5, putative [Ricinus communis]
8 Hb_005539_190 0.1207861829 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31 [Jatropha curcas]
9 Hb_002918_060 0.1219438933 - - PREDICTED: glyoxysomal processing protease, glyoxysomal isoform X1 [Jatropha curcas]
10 Hb_032278_020 0.1219456142 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X1 [Jatropha curcas]
11 Hb_000086_560 0.1229602245 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR2 isoform X2 [Jatropha curcas]
12 Hb_000914_080 0.1244959623 - - ubiquitin-protein ligase, putative [Ricinus communis]
13 Hb_140049_030 0.127074474 - - non-specific lipid-transfer protein-like protein At2g13820 precursor [Jatropha curcas]
14 Hb_000392_050 0.1281244038 - - PREDICTED: uncharacterized protein LOC105640540 isoform X2 [Jatropha curcas]
15 Hb_000351_140 0.1282247808 - - PREDICTED: vacuolar protein sorting-associated protein 9A-like isoform X3 [Pyrus x bretschneideri]
16 Hb_002309_010 0.1290764667 - - PREDICTED: glutaminyl-peptide cyclotransferase-like [Jatropha curcas]
17 Hb_000359_120 0.1302803097 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001307_080 0.1305291101 - - PREDICTED: phospholipid--sterol O-acyltransferase [Jatropha curcas]
19 Hb_005754_010 0.1305496866 - - hypothetical protein POPTR_0660s00210g [Populus trichocarpa]
20 Hb_001832_130 0.1307401319 - - PREDICTED: WD-40 repeat-containing protein MSI4 [Jatropha curcas]

Gene co-expression network

sample Hb_003388_050 Hb_003388_050 Hb_018790_070 Hb_018790_070 Hb_003388_050--Hb_018790_070 Hb_050847_020 Hb_050847_020 Hb_003388_050--Hb_050847_020 Hb_001102_080 Hb_001102_080 Hb_003388_050--Hb_001102_080 Hb_000270_460 Hb_000270_460 Hb_003388_050--Hb_000270_460 Hb_000011_360 Hb_000011_360 Hb_003388_050--Hb_000011_360 Hb_002045_150 Hb_002045_150 Hb_003388_050--Hb_002045_150 Hb_018790_070--Hb_001102_080 Hb_002942_050 Hb_002942_050 Hb_018790_070--Hb_002942_050 Hb_000392_050 Hb_000392_050 Hb_018790_070--Hb_000392_050 Hb_002157_260 Hb_002157_260 Hb_018790_070--Hb_002157_260 Hb_000395_020 Hb_000395_020 Hb_018790_070--Hb_000395_020 Hb_000480_010 Hb_000480_010 Hb_018790_070--Hb_000480_010 Hb_002783_310 Hb_002783_310 Hb_050847_020--Hb_002783_310 Hb_000771_180 Hb_000771_180 Hb_050847_020--Hb_000771_180 Hb_050847_020--Hb_002045_150 Hb_011386_040 Hb_011386_040 Hb_050847_020--Hb_011386_040 Hb_140049_030 Hb_140049_030 Hb_050847_020--Hb_140049_030 Hb_000136_090 Hb_000136_090 Hb_050847_020--Hb_000136_090 Hb_001102_080--Hb_000480_010 Hb_002888_070 Hb_002888_070 Hb_001102_080--Hb_002888_070 Hb_007044_040 Hb_007044_040 Hb_001102_080--Hb_007044_040 Hb_000868_060 Hb_000868_060 Hb_001102_080--Hb_000868_060 Hb_001102_080--Hb_000270_460 Hb_007982_070 Hb_007982_070 Hb_000270_460--Hb_007982_070 Hb_000300_360 Hb_000300_360 Hb_000270_460--Hb_000300_360 Hb_001143_180 Hb_001143_180 Hb_000270_460--Hb_001143_180 Hb_000270_460--Hb_002045_150 Hb_007558_120 Hb_007558_120 Hb_000270_460--Hb_007558_120 Hb_032278_020 Hb_032278_020 Hb_000011_360--Hb_032278_020 Hb_000844_070 Hb_000844_070 Hb_000011_360--Hb_000844_070 Hb_000011_360--Hb_018790_070 Hb_002309_010 Hb_002309_010 Hb_000011_360--Hb_002309_010 Hb_005965_030 Hb_005965_030 Hb_000011_360--Hb_005965_030 Hb_004209_020 Hb_004209_020 Hb_000011_360--Hb_004209_020 Hb_002045_150--Hb_002157_260 Hb_002045_150--Hb_140049_030 Hb_002045_150--Hb_000771_180 Hb_002045_150--Hb_000300_360 Hb_006452_160 Hb_006452_160 Hb_002045_150--Hb_006452_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.85232 0.969825 1.07566 0.754582 1.79794 1.38138
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.375991 0.641005 0.281019 1.36577 0.278432

CAGE analysis