Hb_003388_090

Information

Type -
Description -
Location Contig3388: 59560-61915
Sequence    

Annotation

kegg
ID atr:s00007p00266160
description AMTR_s00007p00266160; hypothetical protein
nr
ID KHG29436.1
description putative beta-D-xylosidase 5 -like protein [Gossypium arboreum]
swissprot
ID -
description -
trembl
ID A0A0B0Q0Z1
description Putative beta-D-xylosidase 5-like protein OS=Gossypium arboreum GN=F383_12507 PE=4 SV=1
Gene Ontology
ID GO:0016798
description beta-xylosidase alpha-l-arabinofuranosidase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35411: 19745-68798
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003388_090 0.0 - - putative beta-D-xylosidase 5 -like protein [Gossypium arboreum]
2 Hb_000258_190 0.0004851957 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
3 Hb_000265_180 0.0008719191 - - Alpha/beta-Hydrolases superfamily protein, putative [Theobroma cacao]
4 Hb_000143_040 0.0010536337 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
5 Hb_011016_040 0.0010782454 - - calcium-dependent protein kinase, putative [Ricinus communis]
6 Hb_004881_110 0.0026880712 - - -
7 Hb_001369_330 0.0027613293 - - conserved hypothetical protein [Ricinus communis]
8 Hb_010120_010 0.003423723 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
9 Hb_010267_010 0.0043130987 - - -
10 Hb_035492_010 0.0253627459 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
11 Hb_000635_120 0.0289204739 - - -
12 Hb_001999_110 0.0290366353 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Populus euphratica]
13 Hb_011457_060 0.0300529568 - - PREDICTED: uncharacterized protein LOC105649957 [Jatropha curcas]
14 Hb_012368_060 0.0304676257 - - -
15 Hb_187134_010 0.0971915976 - - -
16 Hb_007273_010 0.1052258367 - - PREDICTED: 60S acidic ribosomal protein P2B-like [Populus euphratica]
17 Hb_185736_010 0.1166780834 - - -
18 Hb_083103_030 0.1378709351 - - putative retrotransposon protein [Malus domestica]
19 Hb_103832_030 0.141681978 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
20 Hb_172503_010 0.1424735698 - - PREDICTED: uncharacterized protein LOC105647154 [Jatropha curcas]

Gene co-expression network

sample Hb_003388_090 Hb_003388_090 Hb_000258_190 Hb_000258_190 Hb_003388_090--Hb_000258_190 Hb_000265_180 Hb_000265_180 Hb_003388_090--Hb_000265_180 Hb_000143_040 Hb_000143_040 Hb_003388_090--Hb_000143_040 Hb_011016_040 Hb_011016_040 Hb_003388_090--Hb_011016_040 Hb_004881_110 Hb_004881_110 Hb_003388_090--Hb_004881_110 Hb_001369_330 Hb_001369_330 Hb_003388_090--Hb_001369_330 Hb_000258_190--Hb_000143_040 Hb_000258_190--Hb_011016_040 Hb_000258_190--Hb_000265_180 Hb_000258_190--Hb_004881_110 Hb_000258_190--Hb_001369_330 Hb_000265_180--Hb_004881_110 Hb_000265_180--Hb_001369_330 Hb_000265_180--Hb_000143_040 Hb_000265_180--Hb_011016_040 Hb_000143_040--Hb_011016_040 Hb_000143_040--Hb_004881_110 Hb_000143_040--Hb_001369_330 Hb_011016_040--Hb_004881_110 Hb_011016_040--Hb_001369_330 Hb_004881_110--Hb_001369_330 Hb_010120_010 Hb_010120_010 Hb_004881_110--Hb_010120_010 Hb_010267_010 Hb_010267_010 Hb_004881_110--Hb_010267_010 Hb_001369_330--Hb_010120_010 Hb_001369_330--Hb_010267_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0352892 0 0.0141598 0

CAGE analysis