Hb_003389_040

Information

Type -
Description -
Location Contig3389: 38122-39447
Sequence    

Annotation

kegg
ID rcu:RCOM_0984660
description d-alanyl-d-alanine carboxypeptidase, putative
nr
ID XP_012093242.1
description PREDICTED: trafficking protein particle complex subunit 12 [Jatropha curcas]
swissprot
ID Q8WVT3
description Trafficking protein particle complex subunit 12 OS=Homo sapiens GN=TRAPPC12 PE=1 SV=3
trembl
ID A0A067LQM4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24093 PE=4 SV=1
Gene Ontology
ID GO:0005515
description trafficking protein particle complex subunit 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003389_040 0.0 - - PREDICTED: trafficking protein particle complex subunit 12 [Jatropha curcas]
2 Hb_008226_060 0.0486495105 - - PREDICTED: folic acid synthesis protein fol1-like [Jatropha curcas]
3 Hb_007101_300 0.0538534081 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial [Jatropha curcas]
4 Hb_000032_380 0.0599229565 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000417_040 0.0600753293 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
6 Hb_000357_110 0.0765025807 - - PREDICTED: uncharacterized protein LOC105643970 isoform X2 [Jatropha curcas]
7 Hb_156635_010 0.0779955689 - - PREDICTED: autophagy-related protein 8f [Jatropha curcas]
8 Hb_010997_080 0.0787288081 transcription factor TF Family: mTERF unnamed protein product [Vitis vinifera]
9 Hb_002205_110 0.0813642932 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001123_060 0.0852428829 - - PREDICTED: ALBINO3-like protein 2, chloroplastic [Jatropha curcas]
11 Hb_001278_100 0.0856738091 - - PREDICTED: probable phosphopantothenoylcysteine decarboxylase [Jatropha curcas]
12 Hb_000220_010 0.0878419365 - - PREDICTED: uncharacterized protein LOC105630083 [Jatropha curcas]
13 Hb_000406_080 0.0881094766 - - PREDICTED: trafficking protein particle complex subunit 6B [Jatropha curcas]
14 Hb_005846_040 0.0910756976 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 [Populus euphratica]
15 Hb_007451_010 0.0911723126 - - PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Jatropha curcas]
16 Hb_000028_370 0.0922427163 - - Guanine nucleotide-binding protein alpha-2 subunit [Glycine soja]
17 Hb_000178_130 0.0934131955 - - soluble inorganic pyrophosphatase [Hevea brasiliensis]
18 Hb_000373_070 0.094477417 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Jatropha curcas]
19 Hb_005054_350 0.0946607337 - - PREDICTED: 60S acidic ribosomal protein P0 [Vitis vinifera]
20 Hb_007441_190 0.0953165035 - - hypothetical protein CISIN_1g023046mg [Citrus sinensis]

Gene co-expression network

sample Hb_003389_040 Hb_003389_040 Hb_008226_060 Hb_008226_060 Hb_003389_040--Hb_008226_060 Hb_007101_300 Hb_007101_300 Hb_003389_040--Hb_007101_300 Hb_000032_380 Hb_000032_380 Hb_003389_040--Hb_000032_380 Hb_000417_040 Hb_000417_040 Hb_003389_040--Hb_000417_040 Hb_000357_110 Hb_000357_110 Hb_003389_040--Hb_000357_110 Hb_156635_010 Hb_156635_010 Hb_003389_040--Hb_156635_010 Hb_008226_060--Hb_007101_300 Hb_008226_060--Hb_000032_380 Hb_002205_110 Hb_002205_110 Hb_008226_060--Hb_002205_110 Hb_010997_080 Hb_010997_080 Hb_008226_060--Hb_010997_080 Hb_008226_060--Hb_000417_040 Hb_007101_300--Hb_000032_380 Hb_001225_080 Hb_001225_080 Hb_007101_300--Hb_001225_080 Hb_007101_300--Hb_000417_040 Hb_005489_060 Hb_005489_060 Hb_007101_300--Hb_005489_060 Hb_001278_100 Hb_001278_100 Hb_000032_380--Hb_001278_100 Hb_000032_380--Hb_000417_040 Hb_005054_350 Hb_005054_350 Hb_000032_380--Hb_005054_350 Hb_000406_080 Hb_000406_080 Hb_000417_040--Hb_000406_080 Hb_005846_040 Hb_005846_040 Hb_000417_040--Hb_005846_040 Hb_000032_270 Hb_000032_270 Hb_000417_040--Hb_000032_270 Hb_000357_110--Hb_002205_110 Hb_005306_190 Hb_005306_190 Hb_000357_110--Hb_005306_190 Hb_006816_350 Hb_006816_350 Hb_000357_110--Hb_006816_350 Hb_000357_110--Hb_010997_080 Hb_004586_140 Hb_004586_140 Hb_000357_110--Hb_004586_140 Hb_007451_010 Hb_007451_010 Hb_156635_010--Hb_007451_010 Hb_000220_010 Hb_000220_010 Hb_156635_010--Hb_000220_010 Hb_014720_120 Hb_014720_120 Hb_156635_010--Hb_014720_120 Hb_002740_030 Hb_002740_030 Hb_156635_010--Hb_002740_030 Hb_007441_190 Hb_007441_190 Hb_156635_010--Hb_007441_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.55166 3.97517 2.68868 4.33385 2.43146 4.16133
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.83574 6.03441 3.47339 2.45779 1.55905

CAGE analysis