Hb_003392_020

Information

Type -
Description -
Location Contig3392: 9370-9969
Sequence    

Annotation

kegg
ID ath:AT2G32210
description hypothetical protein
nr
ID XP_012092906.1
description PREDICTED: uncharacterized protein LOC105650609 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID Q9SKX9
description Expressed protein OS=Arabidopsis thaliana GN=At2g32210 PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003392_020 0.0 - - PREDICTED: uncharacterized protein LOC105650609 [Jatropha curcas]
2 Hb_006011_060 0.0006837741 - - -
3 Hb_003430_010 0.0065709833 - - xyloglucan endotransglucosylase/hydrolase protein 33 precursor [Populus trichocarpa]
4 Hb_000123_320 0.0080730462 - - PREDICTED: MADS-box protein FLOWERING LOCUS C-like [Jatropha curcas]
5 Hb_008248_010 0.0085268011 - - -
6 Hb_006586_020 0.0154189212 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
7 Hb_185340_020 0.0163484035 - - -
8 Hb_007259_030 0.0166313596 - - -
9 Hb_101778_020 0.019709642 transcription factor TF Family: SRS conserved hypothetical protein [Ricinus communis]
10 Hb_011924_010 0.0266000774 - - hypothetical protein, partial [Phaeodactylibacter xiamenensis]
11 Hb_068447_010 0.0392939794 - - protein with unknown function [Ricinus communis]
12 Hb_007676_070 0.0429903026 - - PREDICTED: omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1-like [Populus euphratica]
13 Hb_000764_060 0.0444544911 - - PREDICTED: uncharacterized protein LOC101491058 [Cicer arietinum]
14 Hb_001271_040 0.046020928 - - hypothetical protein POPTR_0019s039903g, partial [Populus trichocarpa]
15 Hb_123238_010 0.047493684 - - hypothetical protein JCGZ_16598 [Jatropha curcas]
16 Hb_000756_040 0.048523877 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
17 Hb_003344_020 0.0495134198 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103501197 [Cucumis melo]
18 Hb_008078_040 0.0498881956 - - PREDICTED: uncharacterized protein LOC105764710 isoform X3 [Gossypium raimondii]
19 Hb_001659_030 0.0509645443 - - -
20 Hb_083270_010 0.0524773112 - - hypothetical protein ARALYDRAFT_896220 [Arabidopsis lyrata subsp. lyrata]

Gene co-expression network

sample Hb_003392_020 Hb_003392_020 Hb_006011_060 Hb_006011_060 Hb_003392_020--Hb_006011_060 Hb_003430_010 Hb_003430_010 Hb_003392_020--Hb_003430_010 Hb_000123_320 Hb_000123_320 Hb_003392_020--Hb_000123_320 Hb_008248_010 Hb_008248_010 Hb_003392_020--Hb_008248_010 Hb_006586_020 Hb_006586_020 Hb_003392_020--Hb_006586_020 Hb_185340_020 Hb_185340_020 Hb_003392_020--Hb_185340_020 Hb_006011_060--Hb_003430_010 Hb_006011_060--Hb_008248_010 Hb_006011_060--Hb_000123_320 Hb_006011_060--Hb_185340_020 Hb_007259_030 Hb_007259_030 Hb_006011_060--Hb_007259_030 Hb_003430_010--Hb_000123_320 Hb_003430_010--Hb_006586_020 Hb_101778_020 Hb_101778_020 Hb_003430_010--Hb_101778_020 Hb_003430_010--Hb_008248_010 Hb_000123_320--Hb_006586_020 Hb_000123_320--Hb_101778_020 Hb_000123_320--Hb_008248_010 Hb_008248_010--Hb_185340_020 Hb_008248_010--Hb_007259_030 Hb_006586_020--Hb_101778_020 Hb_011924_010 Hb_011924_010 Hb_006586_020--Hb_011924_010 Hb_006586_020--Hb_006011_060 Hb_185340_020--Hb_007259_030 Hb_185340_020--Hb_003430_010 Hb_185340_020--Hb_000123_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.99568 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.218666 0

CAGE analysis