Hb_003392_030

Information

Type -
Description -
Location Contig3392: 30824-31282
Sequence    

Annotation

kegg
ID rcu:RCOM_1619250
description hypothetical protein
nr
ID XP_002512024.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RE85
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1619250 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003392_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_026650_010 0.0907896233 - - nitrate transporter, putative [Ricinus communis]
3 Hb_035583_010 0.1187194255 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
4 Hb_032621_010 0.1203493309 - - hypothetical protein PHAVU_006G197300g [Phaseolus vulgaris]
5 Hb_001936_030 0.1423041553 - - PREDICTED: polygalacturonase At1g48100 isoform X1 [Jatropha curcas]
6 Hb_003166_020 0.1435629728 - - PREDICTED: RNA-binding E3 ubiquitin-protein ligase MEX3C-like [Jatropha curcas]
7 Hb_050898_020 0.1481956811 - - hypothetical protein JCGZ_19965 [Jatropha curcas]
8 Hb_124625_010 0.1528656585 - - hypothetical protein JCGZ_01142 [Jatropha curcas]
9 Hb_162557_010 0.1560781651 - - PREDICTED: uncharacterized protein LOC105634192 [Jatropha curcas]
10 Hb_000917_330 0.1609518659 - - PREDICTED: leucoanthocyanidin reductase-like [Jatropha curcas]
11 Hb_005396_010 0.1617413131 - - PREDICTED: interleukin enhancer-binding factor 3-B-like [Jatropha curcas]
12 Hb_002218_040 0.1617811536 - - conserved hypothetical protein [Ricinus communis]
13 Hb_148435_010 0.1632989758 - - glutathione s-transferase, putative [Ricinus communis]
14 Hb_012532_020 0.1643667506 - - Isoflavone reductase, putative [Ricinus communis]
15 Hb_002248_020 0.1653801049 transcription factor TF Family: NAC PREDICTED: transcription factor JUNGBRUNNEN 1-like isoform X1 [Populus euphratica]
16 Hb_000668_070 0.1669567031 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000297_180 0.1670106467 - - Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis]
18 Hb_000487_150 0.1679426637 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Jatropha curcas]
19 Hb_000772_070 0.1688131969 - - PREDICTED: uncharacterized protein LOC105649697 [Jatropha curcas]
20 Hb_000748_070 0.1699004955 transcription factor TF Family: WRKY hypothetical protein POPTR_0005s22480g [Populus trichocarpa]

Gene co-expression network

sample Hb_003392_030 Hb_003392_030 Hb_026650_010 Hb_026650_010 Hb_003392_030--Hb_026650_010 Hb_035583_010 Hb_035583_010 Hb_003392_030--Hb_035583_010 Hb_032621_010 Hb_032621_010 Hb_003392_030--Hb_032621_010 Hb_001936_030 Hb_001936_030 Hb_003392_030--Hb_001936_030 Hb_003166_020 Hb_003166_020 Hb_003392_030--Hb_003166_020 Hb_050898_020 Hb_050898_020 Hb_003392_030--Hb_050898_020 Hb_026650_010--Hb_032621_010 Hb_026650_010--Hb_003166_020 Hb_000800_060 Hb_000800_060 Hb_026650_010--Hb_000800_060 Hb_000668_070 Hb_000668_070 Hb_026650_010--Hb_000668_070 Hb_000917_330 Hb_000917_330 Hb_026650_010--Hb_000917_330 Hb_000297_180 Hb_000297_180 Hb_035583_010--Hb_000297_180 Hb_004316_130 Hb_004316_130 Hb_035583_010--Hb_004316_130 Hb_012532_020 Hb_012532_020 Hb_035583_010--Hb_012532_020 Hb_148435_010 Hb_148435_010 Hb_035583_010--Hb_148435_010 Hb_000487_150 Hb_000487_150 Hb_035583_010--Hb_000487_150 Hb_032621_010--Hb_003166_020 Hb_069151_010 Hb_069151_010 Hb_032621_010--Hb_069151_010 Hb_032621_010--Hb_000800_060 Hb_090510_010 Hb_090510_010 Hb_032621_010--Hb_090510_010 Hb_001936_030--Hb_000917_330 Hb_000625_130 Hb_000625_130 Hb_001936_030--Hb_000625_130 Hb_002248_020 Hb_002248_020 Hb_001936_030--Hb_002248_020 Hb_025469_040 Hb_025469_040 Hb_001936_030--Hb_025469_040 Hb_007044_070 Hb_007044_070 Hb_001936_030--Hb_007044_070 Hb_004774_060 Hb_004774_060 Hb_001936_030--Hb_004774_060 Hb_003166_020--Hb_000917_330 Hb_003166_020--Hb_000800_060 Hb_003166_020--Hb_000668_070 Hb_003166_020--Hb_069151_010 Hb_124625_010 Hb_124625_010 Hb_050898_020--Hb_124625_010 Hb_005396_010 Hb_005396_010 Hb_050898_020--Hb_005396_010 Hb_050898_020--Hb_000668_070 Hb_000772_070 Hb_000772_070 Hb_050898_020--Hb_000772_070 Hb_050898_020--Hb_000800_060 Hb_002966_030 Hb_002966_030 Hb_050898_020--Hb_002966_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.911644 0.96495 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.202445 7.56218 0.223041

CAGE analysis