Hb_003392_040

Information

Type -
Description -
Location Contig3392: 34861-40372
Sequence    

Annotation

kegg
ID rcu:RCOM_1619480
description Ethanol tolerance protein GEKO1, putative
nr
ID XP_012092900.1
description PREDICTED: D-aminoacyl-tRNA deacylase [Jatropha curcas]
swissprot
ID Q9ZPQ3
description D-aminoacyl-tRNA deacylase OS=Arabidopsis thaliana GN=GEK1 PE=1 SV=2
trembl
ID A0A067J8F4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05805 PE=4 SV=1
Gene Ontology
ID GO:0005829
description d-aminoacyl-trna deacylase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35435: 34873-40229
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003392_040 0.0 - - PREDICTED: D-aminoacyl-tRNA deacylase [Jatropha curcas]
2 Hb_003058_130 0.0362056758 - - PREDICTED: protein N-lysine methyltransferase METTL21A isoform X1 [Jatropha curcas]
3 Hb_000169_010 0.0544297823 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
4 Hb_011689_080 0.0579142282 - - PREDICTED: uncharacterized protein LOC105631867 [Jatropha curcas]
5 Hb_000032_570 0.0599504212 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KELP [Jatropha curcas]
6 Hb_001377_290 0.0603824251 - - PREDICTED: cyclic pyranopterin monophosphate synthase accessory protein, mitochondrial [Jatropha curcas]
7 Hb_000720_120 0.0604295003 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
8 Hb_158092_070 0.0619028408 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
9 Hb_001135_050 0.0634918302 - - PREDICTED: nitrilase-like protein 2 isoform X1 [Jatropha curcas]
10 Hb_002272_250 0.0687033257 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_000494_020 0.0720912172 - - PREDICTED: actin-related protein 2/3 complex subunit 5A [Jatropha curcas]
12 Hb_002078_150 0.0724578141 - - protein with unknown function [Ricinus communis]
13 Hb_033843_010 0.0728881107 - - PREDICTED: cell division control protein 2 homolog A isoform X1 [Jatropha curcas]
14 Hb_004324_310 0.0732688872 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001246_090 0.0734992719 - - PREDICTED: acyl carrier protein 1, mitochondrial [Jatropha curcas]
16 Hb_000398_180 0.0752098323 - - hypothetical protein PRUPE_ppa009665mg [Prunus persica]
17 Hb_000613_140 0.0753235654 - - PREDICTED: indole-3-glycerol phosphate synthase, chloroplastic [Jatropha curcas]
18 Hb_028872_140 0.0774876979 - - PREDICTED: uncharacterized protein LOC105644767 isoform X1 [Jatropha curcas]
19 Hb_003540_040 0.0778128941 - - hypothetical protein JCGZ_20979 [Jatropha curcas]
20 Hb_015746_010 0.0784070292 - - PREDICTED: triacylglycerol lipase 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_003392_040 Hb_003392_040 Hb_003058_130 Hb_003058_130 Hb_003392_040--Hb_003058_130 Hb_000169_010 Hb_000169_010 Hb_003392_040--Hb_000169_010 Hb_011689_080 Hb_011689_080 Hb_003392_040--Hb_011689_080 Hb_000032_570 Hb_000032_570 Hb_003392_040--Hb_000032_570 Hb_001377_290 Hb_001377_290 Hb_003392_040--Hb_001377_290 Hb_000720_120 Hb_000720_120 Hb_003392_040--Hb_000720_120 Hb_003058_130--Hb_011689_080 Hb_033843_010 Hb_033843_010 Hb_003058_130--Hb_033843_010 Hb_000103_560 Hb_000103_560 Hb_003058_130--Hb_000103_560 Hb_002078_150 Hb_002078_150 Hb_003058_130--Hb_002078_150 Hb_039837_010 Hb_039837_010 Hb_003058_130--Hb_039837_010 Hb_000169_010--Hb_000720_120 Hb_005539_030 Hb_005539_030 Hb_000169_010--Hb_005539_030 Hb_007254_040 Hb_007254_040 Hb_000169_010--Hb_007254_040 Hb_000169_010--Hb_000032_570 Hb_001135_050 Hb_001135_050 Hb_000169_010--Hb_001135_050 Hb_000398_180 Hb_000398_180 Hb_011689_080--Hb_000398_180 Hb_004324_310 Hb_004324_310 Hb_011689_080--Hb_004324_310 Hb_003001_120 Hb_003001_120 Hb_011689_080--Hb_003001_120 Hb_011689_080--Hb_001377_290 Hb_001030_120 Hb_001030_120 Hb_000032_570--Hb_001030_120 Hb_028872_140 Hb_028872_140 Hb_000032_570--Hb_028872_140 Hb_003728_020 Hb_003728_020 Hb_000032_570--Hb_003728_020 Hb_006692_030 Hb_006692_030 Hb_000032_570--Hb_006692_030 Hb_001377_290--Hb_000398_180 Hb_001138_050 Hb_001138_050 Hb_001377_290--Hb_001138_050 Hb_004195_160 Hb_004195_160 Hb_001377_290--Hb_004195_160 Hb_001377_290--Hb_002078_150 Hb_000720_120--Hb_001138_050 Hb_000613_140 Hb_000613_140 Hb_000720_120--Hb_000613_140 Hb_000638_080 Hb_000638_080 Hb_000720_120--Hb_000638_080 Hb_000720_120--Hb_000032_570
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
46.3021 14.2682 14.5573 16.5066 36.1633 47.4324
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
48.7147 42.4489 30.3088 22.1297 7.56933

CAGE analysis