Hb_003397_020

Information

Type -
Description -
Location Contig3397: 40785-41063
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35442: 40885-50332
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003397_020 0.0 - - -
2 Hb_033683_020 0.175591993 - - hypothetical protein POPTR_1072s00200g [Populus trichocarpa]
3 Hb_000115_370 0.196721909 - - PREDICTED: nicotinamide adenine dinucleotide transporter 2, mitochondrial [Jatropha curcas]
4 Hb_000950_030 0.1997091795 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g10290 [Nelumbo nucifera]
5 Hb_169018_010 0.2041172202 - - hypothetical protein POPTR_0014s00800g [Populus trichocarpa]
6 Hb_004627_010 0.2102248603 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004055_020 0.2170671789 - - PREDICTED: uncharacterized protein LOC105631433 [Jatropha curcas]
8 Hb_048702_010 0.2178059424 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X1 [Jatropha curcas]
9 Hb_002909_110 0.2190658196 - - PREDICTED: uncharacterized protein LOC105648153 [Jatropha curcas]
10 Hb_000925_060 0.2197540847 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 9-like [Jatropha curcas]
11 Hb_012707_010 0.2278387345 - - PREDICTED: uncharacterized protein C594.04c [Jatropha curcas]
12 Hb_003642_020 0.2392032228 - - chlorophyll(ide) b reductase, partial [Pyrus x bretschneideri]
13 Hb_004079_050 0.2425002475 - - hypothetical protein JCGZ_07229 [Jatropha curcas]
14 Hb_008206_090 0.2454620295 - - PREDICTED: uncharacterized protein LOC100811033 [Glycine max]
15 Hb_002157_270 0.2461467901 - - PREDICTED: transmembrane protein 87B [Jatropha curcas]
16 Hb_000077_100 0.2500477762 - - PREDICTED: mannan endo-1,4-beta-mannosidase 2-like isoform X1 [Jatropha curcas]
17 Hb_000094_200 0.2528808032 - - conserved hypothetical protein [Ricinus communis]
18 Hb_146834_010 0.2538204453 - - Uncharacterized protein TCM_035385 [Theobroma cacao]
19 Hb_006634_110 0.253970679 - - BnaC04g40780D [Brassica napus]
20 Hb_000297_140 0.2553784713 - - hypothetical protein RCOM_0293450 [Ricinus communis]

Gene co-expression network

sample Hb_003397_020 Hb_003397_020 Hb_033683_020 Hb_033683_020 Hb_003397_020--Hb_033683_020 Hb_000115_370 Hb_000115_370 Hb_003397_020--Hb_000115_370 Hb_000950_030 Hb_000950_030 Hb_003397_020--Hb_000950_030 Hb_169018_010 Hb_169018_010 Hb_003397_020--Hb_169018_010 Hb_004627_010 Hb_004627_010 Hb_003397_020--Hb_004627_010 Hb_004055_020 Hb_004055_020 Hb_003397_020--Hb_004055_020 Hb_033683_010 Hb_033683_010 Hb_033683_020--Hb_033683_010 Hb_033683_020--Hb_000950_030 Hb_033683_020--Hb_004627_010 Hb_002157_270 Hb_002157_270 Hb_033683_020--Hb_002157_270 Hb_057556_010 Hb_057556_010 Hb_033683_020--Hb_057556_010 Hb_000115_370--Hb_169018_010 Hb_003968_030 Hb_003968_030 Hb_000115_370--Hb_003968_030 Hb_149507_010 Hb_149507_010 Hb_000115_370--Hb_149507_010 Hb_002370_020 Hb_002370_020 Hb_000115_370--Hb_002370_020 Hb_146036_010 Hb_146036_010 Hb_000115_370--Hb_146036_010 Hb_000950_030--Hb_002157_270 Hb_012707_010 Hb_012707_010 Hb_000950_030--Hb_012707_010 Hb_000950_030--Hb_004055_020 Hb_000806_130 Hb_000806_130 Hb_000950_030--Hb_000806_130 Hb_001486_350 Hb_001486_350 Hb_000950_030--Hb_001486_350 Hb_006634_110 Hb_006634_110 Hb_000950_030--Hb_006634_110 Hb_001276_030 Hb_001276_030 Hb_169018_010--Hb_001276_030 Hb_011082_030 Hb_011082_030 Hb_169018_010--Hb_011082_030 Hb_031579_010 Hb_031579_010 Hb_169018_010--Hb_031579_010 Hb_011709_010 Hb_011709_010 Hb_169018_010--Hb_011709_010 Hb_169018_010--Hb_003968_030 Hb_150486_010 Hb_150486_010 Hb_004627_010--Hb_150486_010 Hb_004627_010--Hb_002157_270 Hb_004627_010--Hb_000950_030 Hb_000925_060 Hb_000925_060 Hb_004627_010--Hb_000925_060 Hb_048702_010 Hb_048702_010 Hb_004627_010--Hb_048702_010 Hb_004055_020--Hb_002157_270 Hb_000107_350 Hb_000107_350 Hb_004055_020--Hb_000107_350 Hb_004055_020--Hb_000806_130 Hb_026527_010 Hb_026527_010 Hb_004055_020--Hb_026527_010 Hb_000077_100 Hb_000077_100 Hb_004055_020--Hb_000077_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 2.71521 22.4662 0 4.72369
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.906086 0.715239 0.976648 3.66962 9.50041

CAGE analysis