Hb_003397_030

Information

Type rubber biosynthesis
Description Gene Name: Pyruvate dehydrogenase
Location Contig3397: 41153-50372
Sequence    

Annotation

kegg
ID rcu:RCOM_0632150
description pyruvate dehydrogenase, putative (EC:1.2.4.1)
nr
ID XP_012072118.1
description PREDICTED: pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [Jatropha curcas]
swissprot
ID O64688
description Pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic OS=Arabidopsis thaliana GN=E1-BETA-2 PE=2 SV=1
trembl
ID A0A067KP26
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04629 PE=4 SV=1
Gene Ontology
ID GO:0004739
description pyruvate dehydrogenase e1 component subunit beta- chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35442: 40885-50332 , PASA_asmbl_35445: 48489-48852
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003397_030 0.0 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [Jatropha curcas]
2 Hb_001386_090 0.0764776702 - - PREDICTED: uncharacterized protein LOC105632529 [Jatropha curcas]
3 Hb_000169_070 0.081803629 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1 [Jatropha curcas]
4 Hb_001711_060 0.1105948908 - - PREDICTED: ferredoxin isoform X1 [Jatropha curcas]
5 Hb_004517_030 0.1107583122 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000792_050 0.1245388369 - - PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_000438_130 0.1255596925 - - uroporphyrinogen decarboxylase, putative [Ricinus communis]
8 Hb_003160_070 0.127460372 - - PREDICTED: VIN3-like protein 1 [Jatropha curcas]
9 Hb_000392_450 0.1279488441 - - PREDICTED: isochorismate synthase 2, chloroplastic [Jatropha curcas]
10 Hb_006252_030 0.1289029577 - - PREDICTED: uncharacterized protein LOC105638333 [Jatropha curcas]
11 Hb_002045_090 0.1290105711 - - PREDICTED: tryptophan synthase alpha chain-like [Jatropha curcas]
12 Hb_012653_030 0.1351314599 - - PREDICTED: probable ribose-5-phosphate isomerase 4, chloroplastic isoform X2 [Jatropha curcas]
13 Hb_000996_080 0.1369628226 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
14 Hb_002078_120 0.138025391 - - PREDICTED: F-box/kelch-repeat protein At1g67480 [Jatropha curcas]
15 Hb_000212_250 0.1406695227 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002942_120 0.1417468648 transcription factor TF Family: bHLH Transcription factor ICE1, putative [Ricinus communis]
17 Hb_000958_120 0.1456317166 - - PREDICTED: uncharacterized protein LOC105646385 [Jatropha curcas]
18 Hb_001519_170 0.1463651292 - - PREDICTED: K(+) efflux antiporter 3, chloroplastic [Jatropha curcas]
19 Hb_002701_070 0.1465473756 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
20 Hb_000056_310 0.1466350382 - - PREDICTED: uncharacterized protein LOC105630433 [Jatropha curcas]

Gene co-expression network

sample Hb_003397_030 Hb_003397_030 Hb_001386_090 Hb_001386_090 Hb_003397_030--Hb_001386_090 Hb_000169_070 Hb_000169_070 Hb_003397_030--Hb_000169_070 Hb_001711_060 Hb_001711_060 Hb_003397_030--Hb_001711_060 Hb_004517_030 Hb_004517_030 Hb_003397_030--Hb_004517_030 Hb_000792_050 Hb_000792_050 Hb_003397_030--Hb_000792_050 Hb_000438_130 Hb_000438_130 Hb_003397_030--Hb_000438_130 Hb_001386_090--Hb_000438_130 Hb_001386_090--Hb_001711_060 Hb_001386_090--Hb_000169_070 Hb_001386_090--Hb_004517_030 Hb_000392_450 Hb_000392_450 Hb_001386_090--Hb_000392_450 Hb_006252_030 Hb_006252_030 Hb_000169_070--Hb_006252_030 Hb_000322_040 Hb_000322_040 Hb_000169_070--Hb_000322_040 Hb_003470_100 Hb_003470_100 Hb_000169_070--Hb_003470_100 Hb_004007_170 Hb_004007_170 Hb_000169_070--Hb_004007_170 Hb_001519_170 Hb_001519_170 Hb_001711_060--Hb_001519_170 Hb_012653_030 Hb_012653_030 Hb_001711_060--Hb_012653_030 Hb_000146_030 Hb_000146_030 Hb_001711_060--Hb_000146_030 Hb_001711_060--Hb_000438_130 Hb_004517_030--Hb_000392_450 Hb_000212_250 Hb_000212_250 Hb_004517_030--Hb_000212_250 Hb_007217_010 Hb_007217_010 Hb_004517_030--Hb_007217_010 Hb_003874_010 Hb_003874_010 Hb_004517_030--Hb_003874_010 Hb_001922_110 Hb_001922_110 Hb_000792_050--Hb_001922_110 Hb_000227_400 Hb_000227_400 Hb_000792_050--Hb_000227_400 Hb_001141_050 Hb_001141_050 Hb_000792_050--Hb_001141_050 Hb_003160_070 Hb_003160_070 Hb_000792_050--Hb_003160_070 Hb_000996_080 Hb_000996_080 Hb_000792_050--Hb_000996_080 Hb_000438_130--Hb_000392_450 Hb_002027_320 Hb_002027_320 Hb_000438_130--Hb_002027_320 Hb_000438_130--Hb_012653_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.88249 5.41236 73.8477 20.1891 3.92614 3.38721
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.34772 4.92335 5.98308 7.23668 34.1542

CAGE analysis