Hb_003398_010

Information

Type -
Description -
Location Contig3398: 10169-11196
Sequence    

Annotation

kegg
ID egr:104427911
description uncharacterized protein At4g02000-like
nr
ID XP_010039221.1
description PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID F4NCI6
description Uncharacterized protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003398_010 0.0 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
2 Hb_041237_010 0.1145231218 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000617_040 0.15089202 - - PREDICTED: uncharacterized protein LOC105647487 isoform X2 [Jatropha curcas]
4 Hb_004631_160 0.1578986062 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Jatropha curcas]
5 Hb_003299_080 0.1659468294 - - PREDICTED: uncharacterized protein LOC105649790 [Jatropha curcas]
6 Hb_000212_130 0.1849531031 - - conserved hypothetical protein [Ricinus communis]
7 Hb_031089_030 0.1880084864 - - ubiquitin-conjugating enzyme E2 28 [Arabidopsis thaliana]
8 Hb_001247_140 0.1896008077 - - -
9 Hb_004206_040 0.200174316 - - cytochrome P450, putative [Ricinus communis]
10 Hb_000176_060 0.200826591 - - unnamed protein product [Vitis vinifera]
11 Hb_000413_170 0.2024194721 - - PREDICTED: probable histone H2A.3 [Jatropha curcas]
12 Hb_002609_010 0.2044575565 - - PREDICTED: uncharacterized protein LOC105630866 [Jatropha curcas]
13 Hb_000792_110 0.2065537669 - - PREDICTED: E3 ubiquitin-protein ligase Hakai [Jatropha curcas]
14 Hb_001247_230 0.2091464958 - - nucleic acid binding protein, putative [Ricinus communis]
15 Hb_003816_020 0.2094193443 - - hypothetical protein POPTR_0017s05940g [Populus trichocarpa]
16 Hb_000101_210 0.2115753624 - - PREDICTED: uncharacterized protein LOC105646445 [Jatropha curcas]
17 Hb_007978_020 0.2120334914 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA1-like [Jatropha curcas]
18 Hb_002783_050 0.2125019696 - - zinc finger protein, putative [Ricinus communis]
19 Hb_001907_060 0.2137891662 - - PREDICTED: structural maintenance of chromosomes protein 5 [Jatropha curcas]
20 Hb_000116_570 0.2147205483 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5-like [Jatropha curcas]

Gene co-expression network

sample Hb_003398_010 Hb_003398_010 Hb_041237_010 Hb_041237_010 Hb_003398_010--Hb_041237_010 Hb_000617_040 Hb_000617_040 Hb_003398_010--Hb_000617_040 Hb_004631_160 Hb_004631_160 Hb_003398_010--Hb_004631_160 Hb_003299_080 Hb_003299_080 Hb_003398_010--Hb_003299_080 Hb_000212_130 Hb_000212_130 Hb_003398_010--Hb_000212_130 Hb_031089_030 Hb_031089_030 Hb_003398_010--Hb_031089_030 Hb_000014_130 Hb_000014_130 Hb_041237_010--Hb_000014_130 Hb_041237_010--Hb_000617_040 Hb_000413_170 Hb_000413_170 Hb_041237_010--Hb_000413_170 Hb_007978_020 Hb_007978_020 Hb_041237_010--Hb_007978_020 Hb_041237_010--Hb_003299_080 Hb_001247_140 Hb_001247_140 Hb_000617_040--Hb_001247_140 Hb_000617_040--Hb_031089_030 Hb_000617_040--Hb_004631_160 Hb_007257_050 Hb_007257_050 Hb_000617_040--Hb_007257_050 Hb_008616_030 Hb_008616_030 Hb_004631_160--Hb_008616_030 Hb_007044_010 Hb_007044_010 Hb_004631_160--Hb_007044_010 Hb_011639_010 Hb_011639_010 Hb_004631_160--Hb_011639_010 Hb_000205_070 Hb_000205_070 Hb_004631_160--Hb_000205_070 Hb_003299_080--Hb_001247_140 Hb_013753_010 Hb_013753_010 Hb_003299_080--Hb_013753_010 Hb_003299_080--Hb_031089_030 Hb_005038_020 Hb_005038_020 Hb_003299_080--Hb_005038_020 Hb_002609_010 Hb_002609_010 Hb_003299_080--Hb_002609_010 Hb_002078_420 Hb_002078_420 Hb_003299_080--Hb_002078_420 Hb_000792_110 Hb_000792_110 Hb_000212_130--Hb_000792_110 Hb_000619_070 Hb_000619_070 Hb_000212_130--Hb_000619_070 Hb_101151_020 Hb_101151_020 Hb_000212_130--Hb_101151_020 Hb_000608_340 Hb_000608_340 Hb_000212_130--Hb_000608_340 Hb_000212_130--Hb_003299_080 Hb_035360_010 Hb_035360_010 Hb_000212_130--Hb_035360_010 Hb_031089_030--Hb_007257_050 Hb_084429_010 Hb_084429_010 Hb_031089_030--Hb_084429_010 Hb_001396_260 Hb_001396_260 Hb_031089_030--Hb_001396_260 Hb_000375_370 Hb_000375_370 Hb_031089_030--Hb_000375_370 Hb_031089_030--Hb_001247_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.46693 1.56518 0.073886 0.0911432 1.8448 2.01647
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.300886 0.118279 0 0.168065 0

CAGE analysis