Hb_003398_070

Information

Type transcription factor
Description TF Family: GRAS
Location Contig3398: 129651-133561
Sequence    

Annotation

kegg
ID rcu:RCOM_0039810
description hypothetical protein
nr
ID XP_012088986.1
description PREDICTED: scarecrow-like protein 9 [Jatropha curcas]
swissprot
ID O80933
description Scarecrow-like protein 9 OS=Arabidopsis thaliana GN=SCL9 PE=2 SV=1
trembl
ID A0A067LCG6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01438 PE=4 SV=1
Gene Ontology
ID GO:0006351
description scarecrow-like protein 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35455: 129694-131495 , PASA_asmbl_35456: 131699-132042 , PASA_asmbl_35458: 132948-133116
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003398_070 0.0 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 9 [Jatropha curcas]
2 Hb_065500_030 0.1130058995 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 [Jatropha curcas]
3 Hb_002005_120 0.119597215 - - PREDICTED: protein MEI2-like 5 [Jatropha curcas]
4 Hb_002233_020 0.1219727601 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
5 Hb_003544_070 0.1239339133 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000856_020 0.1329493079 - - PREDICTED: probable beta-1,3-galactosyltransferase 19 [Jatropha curcas]
7 Hb_002400_140 0.1343810744 - - protein kinase, putative [Ricinus communis]
8 Hb_001662_180 0.1395880809 - - PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X5 [Citrus sinensis]
9 Hb_000866_370 0.1401265172 - - synaptotagmin, putative [Ricinus communis]
10 Hb_000789_240 0.1420738971 - - gamma glutamyl transpeptidases, putative [Ricinus communis]
11 Hb_000002_270 0.1434040762 - - hypothetical protein VITISV_043897 [Vitis vinifera]
12 Hb_004109_380 0.1450690302 - - PREDICTED: callose synthase 9 isoform X4 [Pyrus x bretschneideri]
13 Hb_011828_030 0.145545078 - - ubiquitin protein ligase E3a, putative [Ricinus communis]
14 Hb_004108_170 0.1513899188 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000676_040 0.1519247033 - - hypothetical protein POPTR_0007s13320g [Populus trichocarpa]
16 Hb_001625_010 0.1527611911 - - PREDICTED: glyoxylate/hydroxypyruvate reductase HPR3-like [Jatropha curcas]
17 Hb_001699_280 0.1536613809 - - PREDICTED: transformation/transcription domain-associated protein [Jatropha curcas]
18 Hb_000836_020 0.1539771492 transcription factor TF Family: SNF2 Chromo domain protein, putative [Ricinus communis]
19 Hb_003604_050 0.1557321676 - - PREDICTED: MAP3K epsilon protein kinase 1-like isoform X2 [Jatropha curcas]
20 Hb_089100_040 0.1574236025 - - PREDICTED: uncharacterized protein LOC105638961 [Jatropha curcas]

Gene co-expression network

sample Hb_003398_070 Hb_003398_070 Hb_065500_030 Hb_065500_030 Hb_003398_070--Hb_065500_030 Hb_002005_120 Hb_002005_120 Hb_003398_070--Hb_002005_120 Hb_002233_020 Hb_002233_020 Hb_003398_070--Hb_002233_020 Hb_003544_070 Hb_003544_070 Hb_003398_070--Hb_003544_070 Hb_000856_020 Hb_000856_020 Hb_003398_070--Hb_000856_020 Hb_002400_140 Hb_002400_140 Hb_003398_070--Hb_002400_140 Hb_065500_030--Hb_002005_120 Hb_011828_030 Hb_011828_030 Hb_065500_030--Hb_011828_030 Hb_004162_120 Hb_004162_120 Hb_065500_030--Hb_004162_120 Hb_000836_020 Hb_000836_020 Hb_065500_030--Hb_000836_020 Hb_000117_070 Hb_000117_070 Hb_065500_030--Hb_000117_070 Hb_000599_130 Hb_000599_130 Hb_065500_030--Hb_000599_130 Hb_014720_020 Hb_014720_020 Hb_002005_120--Hb_014720_020 Hb_000917_100 Hb_000917_100 Hb_002005_120--Hb_000917_100 Hb_003604_050 Hb_003604_050 Hb_002005_120--Hb_003604_050 Hb_002016_060 Hb_002016_060 Hb_002005_120--Hb_002016_060 Hb_003120_070 Hb_003120_070 Hb_002005_120--Hb_003120_070 Hb_000866_370 Hb_000866_370 Hb_002233_020--Hb_000866_370 Hb_000010_350 Hb_000010_350 Hb_002233_020--Hb_000010_350 Hb_089100_040 Hb_089100_040 Hb_002233_020--Hb_089100_040 Hb_001377_250 Hb_001377_250 Hb_002233_020--Hb_001377_250 Hb_003060_090 Hb_003060_090 Hb_002233_020--Hb_003060_090 Hb_001699_150 Hb_001699_150 Hb_003544_070--Hb_001699_150 Hb_000676_040 Hb_000676_040 Hb_003544_070--Hb_000676_040 Hb_001675_010 Hb_001675_010 Hb_003544_070--Hb_001675_010 Hb_002524_020 Hb_002524_020 Hb_003544_070--Hb_002524_020 Hb_001799_190 Hb_001799_190 Hb_003544_070--Hb_001799_190 Hb_008667_060 Hb_008667_060 Hb_003544_070--Hb_008667_060 Hb_000856_020--Hb_003604_050 Hb_002928_190 Hb_002928_190 Hb_000856_020--Hb_002928_190 Hb_000270_230 Hb_000270_230 Hb_000856_020--Hb_000270_230 Hb_000856_020--Hb_002400_140 Hb_008686_020 Hb_008686_020 Hb_000856_020--Hb_008686_020 Hb_006910_060 Hb_006910_060 Hb_000856_020--Hb_006910_060 Hb_003581_170 Hb_003581_170 Hb_002400_140--Hb_003581_170 Hb_000105_040 Hb_000105_040 Hb_002400_140--Hb_000105_040 Hb_002400_140--Hb_000836_020 Hb_002400_140--Hb_003604_050 Hb_004648_050 Hb_004648_050 Hb_002400_140--Hb_004648_050 Hb_188063_010 Hb_188063_010 Hb_002400_140--Hb_188063_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.98084 21.7554 2.6785 6.58426 3.15824 7.46595
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.22837 2.28445 1.1147 11.7206 8.75485

CAGE analysis