Hb_003398_140

Information

Type -
Description -
Location Contig3398: 224048-226417
Sequence    

Annotation

kegg
ID rcu:RCOM_0000910
description Protein kinase APK1B, chloroplast precursor, putative (EC:2.7.10.2)
nr
ID XP_002533148.1
description Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q06548
description Protein kinase APK1A, chloroplastic OS=Arabidopsis thaliana GN=APK1A PE=2 SV=1
trembl
ID B9T4H9
description Protein kinase APK1B, chloroplast, putative OS=Ricinus communis GN=RCOM_0000910 PE=3 SV=1
Gene Ontology
ID GO:0004674
description protein kinase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35467: 225464-226499 , PASA_asmbl_35468: 226184-226530
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003398_140 0.0 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
2 Hb_086692_020 0.1318869626 - - PREDICTED: protein kinase APK1B, chloroplastic-like [Jatropha curcas]
3 Hb_000094_110 0.1548110768 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003847_020 0.161043527 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
5 Hb_002067_140 0.1770228489 - - -
6 Hb_028271_020 0.1807741062 - - acyl-CoA oxidase, putative [Ricinus communis]
7 Hb_026687_010 0.1809969209 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Eucalyptus grandis]
8 Hb_006006_050 0.1843528358 - - PREDICTED: methylthioribose kinase-like [Gossypium raimondii]
9 Hb_012053_010 0.1845048624 - - srpk, putative [Ricinus communis]
10 Hb_002344_070 0.1845585881 - - PREDICTED: proteasome subunit alpha type-6 [Jatropha curcas]
11 Hb_012053_050 0.1847174113 - - PREDICTED: UDP-D-apiose/UDP-D-xylose synthase 2 [Jatropha curcas]
12 Hb_001052_030 0.1854128005 - - PREDICTED: protein TIC 20-IV, chloroplastic [Jatropha curcas]
13 Hb_000282_070 0.1869486781 - - PREDICTED: protein REVERSION-TO-ETHYLENE SENSITIVITY1 [Jatropha curcas]
14 Hb_146225_010 0.1912592053 - - mitochondrial inner membrane protease subunit, putative [Ricinus communis]
15 Hb_002105_030 0.1923699672 - - -
16 Hb_001396_090 0.1929618503 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 75 [Jatropha curcas]
17 Hb_009680_040 0.1932223977 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
18 Hb_000340_440 0.1964866709 - - PREDICTED: gibberellin receptor GID1B [Jatropha curcas]
19 Hb_000123_160 0.1981711864 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
20 Hb_001776_170 0.2009253824 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003398_140 Hb_003398_140 Hb_086692_020 Hb_086692_020 Hb_003398_140--Hb_086692_020 Hb_000094_110 Hb_000094_110 Hb_003398_140--Hb_000094_110 Hb_003847_020 Hb_003847_020 Hb_003398_140--Hb_003847_020 Hb_002067_140 Hb_002067_140 Hb_003398_140--Hb_002067_140 Hb_028271_020 Hb_028271_020 Hb_003398_140--Hb_028271_020 Hb_026687_010 Hb_026687_010 Hb_003398_140--Hb_026687_010 Hb_012305_020 Hb_012305_020 Hb_086692_020--Hb_012305_020 Hb_061383_010 Hb_061383_010 Hb_086692_020--Hb_061383_010 Hb_001266_030 Hb_001266_030 Hb_086692_020--Hb_001266_030 Hb_012053_010 Hb_012053_010 Hb_086692_020--Hb_012053_010 Hb_001396_090 Hb_001396_090 Hb_086692_020--Hb_001396_090 Hb_001052_030 Hb_001052_030 Hb_000094_110--Hb_001052_030 Hb_000094_110--Hb_003847_020 Hb_000175_130 Hb_000175_130 Hb_000094_110--Hb_000175_130 Hb_146225_010 Hb_146225_010 Hb_000094_110--Hb_146225_010 Hb_001386_050 Hb_001386_050 Hb_000094_110--Hb_001386_050 Hb_002918_140 Hb_002918_140 Hb_000094_110--Hb_002918_140 Hb_003847_020--Hb_026687_010 Hb_003992_080 Hb_003992_080 Hb_003847_020--Hb_003992_080 Hb_003847_020--Hb_001052_030 Hb_000340_440 Hb_000340_440 Hb_003847_020--Hb_000340_440 Hb_001776_170 Hb_001776_170 Hb_002067_140--Hb_001776_170 Hb_001369_600 Hb_001369_600 Hb_002067_140--Hb_001369_600 Hb_012053_050 Hb_012053_050 Hb_002067_140--Hb_012053_050 Hb_001369_450 Hb_001369_450 Hb_002067_140--Hb_001369_450 Hb_001488_370 Hb_001488_370 Hb_002067_140--Hb_001488_370 Hb_002067_140--Hb_000094_110 Hb_001449_100 Hb_001449_100 Hb_028271_020--Hb_001449_100 Hb_002784_100 Hb_002784_100 Hb_028271_020--Hb_002784_100 Hb_028271_020--Hb_012053_010 Hb_003540_200 Hb_003540_200 Hb_028271_020--Hb_003540_200 Hb_033834_050 Hb_033834_050 Hb_028271_020--Hb_033834_050 Hb_000997_190 Hb_000997_190 Hb_028271_020--Hb_000997_190 Hb_026687_010--Hb_028271_020 Hb_000099_070 Hb_000099_070 Hb_026687_010--Hb_000099_070 Hb_026687_010--Hb_003992_080 Hb_026687_010--Hb_000094_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.17659 8.95066 2.64456 6.72535 6.95829 9.31348
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.9002 112.41 40.6518 22.4009 1.0444

CAGE analysis