Hb_003399_100

Information

Type -
Description -
Location Contig3399: 64301-66347
Sequence    

Annotation

kegg
ID rcu:RCOM_1588500
description cyclin A, putative
nr
ID XP_012068270.1
description PREDICTED: putative cyclin-A3-1 [Jatropha curcas]
swissprot
ID Q9FMH5
description Putative cyclin-A3-1 OS=Arabidopsis thaliana GN=CYCA3-1 PE=3 SV=1
trembl
ID A0A067KZN5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16068 PE=3 SV=1
Gene Ontology
ID GO:0005634
description cyclin family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003399_100 0.0 - - PREDICTED: putative cyclin-A3-1 [Jatropha curcas]
2 Hb_002045_190 0.0997896767 - - PREDICTED: histone H2A variant 1 [Jatropha curcas]
3 Hb_030627_070 0.1202315565 - - histone H4 [Zea mays]
4 Hb_006275_060 0.1279807209 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
5 Hb_005725_150 0.1370699169 - - PREDICTED: kinesin-related protein 11 isoform X1 [Jatropha curcas]
6 Hb_010998_050 0.1514734672 - - PREDICTED: kinesin-like protein KIF22 isoform X2 [Jatropha curcas]
7 Hb_089889_010 0.1531070077 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
8 Hb_005375_050 0.1676487853 - - inorganic pyrophosphatase, putative [Ricinus communis]
9 Hb_000349_230 0.1680018852 - - PREDICTED: protein TPX2 [Jatropha curcas]
10 Hb_033594_040 0.170634929 - - PREDICTED: heptahelical transmembrane protein 4-like isoform X2 [Jatropha curcas]
11 Hb_002307_020 0.171323067 - - PREDICTED: histone H1-like [Jatropha curcas]
12 Hb_004116_120 0.1745920362 - - PREDICTED: protein EARLY FLOWERING 4 [Jatropha curcas]
13 Hb_000563_440 0.181621238 - - PREDICTED: condensin-2 complex subunit H2 isoform X2 [Jatropha curcas]
14 Hb_003784_040 0.1834328519 - - Afadin- and alpha-actinin-binding protein, putative [Ricinus communis]
15 Hb_001890_020 0.1849768673 - - hypothetical protein CICLE_v10025198mg [Citrus clementina]
16 Hb_029510_130 0.1857648014 - - PREDICTED: malonate--CoA ligase [Jatropha curcas]
17 Hb_002205_140 0.1878856475 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2b [Jatropha curcas]
18 Hb_000051_080 0.1880774655 - - PREDICTED: DNA (cytosine-5)-methyltransferase CMT3 [Jatropha curcas]
19 Hb_002007_040 0.188964386 - - unnamed protein product [Coffea canephora]
20 Hb_004116_100 0.1892285886 - - Isoamyl acetate-hydrolyzing esterase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003399_100 Hb_003399_100 Hb_002045_190 Hb_002045_190 Hb_003399_100--Hb_002045_190 Hb_030627_070 Hb_030627_070 Hb_003399_100--Hb_030627_070 Hb_006275_060 Hb_006275_060 Hb_003399_100--Hb_006275_060 Hb_005725_150 Hb_005725_150 Hb_003399_100--Hb_005725_150 Hb_010998_050 Hb_010998_050 Hb_003399_100--Hb_010998_050 Hb_089889_010 Hb_089889_010 Hb_003399_100--Hb_089889_010 Hb_002045_190--Hb_006275_060 Hb_004116_120 Hb_004116_120 Hb_002045_190--Hb_004116_120 Hb_002045_190--Hb_030627_070 Hb_089140_090 Hb_089140_090 Hb_002045_190--Hb_089140_090 Hb_033594_040 Hb_033594_040 Hb_002045_190--Hb_033594_040 Hb_000684_120 Hb_000684_120 Hb_030627_070--Hb_000684_120 Hb_000005_110 Hb_000005_110 Hb_030627_070--Hb_000005_110 Hb_030627_070--Hb_006275_060 Hb_006445_020 Hb_006445_020 Hb_030627_070--Hb_006445_020 Hb_002307_020 Hb_002307_020 Hb_006275_060--Hb_002307_020 Hb_000155_150 Hb_000155_150 Hb_006275_060--Hb_000155_150 Hb_003784_040 Hb_003784_040 Hb_006275_060--Hb_003784_040 Hb_006275_060--Hb_005725_150 Hb_000051_080 Hb_000051_080 Hb_005725_150--Hb_000051_080 Hb_005725_150--Hb_003784_040 Hb_010180_030 Hb_010180_030 Hb_005725_150--Hb_010180_030 Hb_001478_020 Hb_001478_020 Hb_005725_150--Hb_001478_020 Hb_002007_040 Hb_002007_040 Hb_005725_150--Hb_002007_040 Hb_036790_030 Hb_036790_030 Hb_010998_050--Hb_036790_030 Hb_000345_410 Hb_000345_410 Hb_010998_050--Hb_000345_410 Hb_002007_280 Hb_002007_280 Hb_010998_050--Hb_002007_280 Hb_000349_230 Hb_000349_230 Hb_010998_050--Hb_000349_230 Hb_000345_130 Hb_000345_130 Hb_010998_050--Hb_000345_130 Hb_005162_130 Hb_005162_130 Hb_010998_050--Hb_005162_130 Hb_089889_010--Hb_002045_190 Hb_001975_130 Hb_001975_130 Hb_089889_010--Hb_001975_130 Hb_005375_050 Hb_005375_050 Hb_089889_010--Hb_005375_050 Hb_001890_020 Hb_001890_020 Hb_089889_010--Hb_001890_020 Hb_089889_010--Hb_030627_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.188715 0.0999095 2.91234 0.849866 0.132128 0.07547
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.354232 0.766231 0.516304 0.279437 0.21532

CAGE analysis