Hb_003400_030

Information

Type -
Description -
Location Contig3400: 60207-61496
Sequence    

Annotation

kegg
ID vvi:104878882
description uncharacterized LOC104878882
nr
ID XP_009786188.1
description PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID A0A0B0NGV1
description ATP-dependent zinc metalloprotease FtsH OS=Gossypium arboreum GN=F383_19049 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003400_030 0.0 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
2 Hb_000944_010 9.82846e-05 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
3 Hb_002400_450 0.0047271277 - - PREDICTED: protein MEMO1 isoform X2 [Sesamum indicum]
4 Hb_000260_190 0.0071695563 - - -
5 Hb_008473_010 0.0107774063 - - PREDICTED: laccase-14-like [Jatropha curcas]
6 Hb_034667_010 0.0113291633 - - -
7 Hb_091369_010 0.0117605974 - - -
8 Hb_002673_050 0.0137912312 - - -
9 Hb_008151_030 0.0178310619 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_010399_020 0.0217349663 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
11 Hb_013205_010 0.0541121744 - - PREDICTED: putative B3 domain-containing protein At2g27410 [Jatropha curcas]
12 Hb_108404_010 0.0622456712 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
13 Hb_128287_010 0.0809729827 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
14 Hb_000204_180 0.122172714 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
15 Hb_027394_010 0.1310359559 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
16 Hb_068347_020 0.1310571273 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
17 Hb_009066_010 0.1361220767 - - -
18 Hb_000227_110 0.1497932019 - - hypothetical protein CICLE_v10010500mg, partial [Citrus clementina]
19 Hb_021068_020 0.1568187447 - - -
20 Hb_002141_010 0.1614154266 - - UDP-glucuronosyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003400_030 Hb_003400_030 Hb_000944_010 Hb_000944_010 Hb_003400_030--Hb_000944_010 Hb_002400_450 Hb_002400_450 Hb_003400_030--Hb_002400_450 Hb_000260_190 Hb_000260_190 Hb_003400_030--Hb_000260_190 Hb_008473_010 Hb_008473_010 Hb_003400_030--Hb_008473_010 Hb_034667_010 Hb_034667_010 Hb_003400_030--Hb_034667_010 Hb_091369_010 Hb_091369_010 Hb_003400_030--Hb_091369_010 Hb_000944_010--Hb_002400_450 Hb_000944_010--Hb_000260_190 Hb_000944_010--Hb_008473_010 Hb_000944_010--Hb_034667_010 Hb_000944_010--Hb_091369_010 Hb_002400_450--Hb_000260_190 Hb_002400_450--Hb_034667_010 Hb_008151_030 Hb_008151_030 Hb_002400_450--Hb_008151_030 Hb_002400_450--Hb_008473_010 Hb_000260_190--Hb_034667_010 Hb_000260_190--Hb_008151_030 Hb_010399_020 Hb_010399_020 Hb_000260_190--Hb_010399_020 Hb_008473_010--Hb_091369_010 Hb_002673_050 Hb_002673_050 Hb_008473_010--Hb_002673_050 Hb_008473_010--Hb_000260_190 Hb_034667_010--Hb_008151_030 Hb_034667_010--Hb_010399_020 Hb_091369_010--Hb_002673_050 Hb_091369_010--Hb_002400_450 Hb_091369_010--Hb_000260_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0164472 0.015426
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis