Hb_003406_010

Information

Type -
Description -
Location Contig3406: 15004-17482
Sequence    

Annotation

kegg
ID pvu:PHAVU_011G1853000
description hypothetical protein
nr
ID XP_010103985.1
description putative ATP-dependent RNA helicase DHX36 [Morus notabilis]
swissprot
ID -
description -
trembl
ID K7MCW5
description Uncharacterized protein OS=Glycine max PE=4 SV=1
Gene Ontology
ID GO:0003676
description atp-dependent rna helicase dhx36

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35621: 14991-15306 , PASA_asmbl_35622: 15427-33347
cDNA
(Sanger)
(ID:Location)		 015_O04.ab1: 15573-33071

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003406_010 0.0 - - putative ATP-dependent RNA helicase DHX36 [Morus notabilis]
2 Hb_000089_220 0.0542490962 - - PREDICTED: protein FAM133-like [Populus euphratica]
3 Hb_002391_300 0.0569870991 - - hypothetical protein PHAVU_002G104100g [Phaseolus vulgaris]
4 Hb_005245_130 0.0591439665 - - PREDICTED: uncharacterized protein LOC105643730 [Jatropha curcas]
5 Hb_004096_030 0.0609329936 - - PREDICTED: KH domain-containing protein At4g18375-like isoform X1 [Jatropha curcas]
6 Hb_007218_080 0.0631120711 - - PREDICTED: uncharacterized protein LOC105631523 [Jatropha curcas]
7 Hb_000645_050 0.0640666459 - - peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein [Populus trichocarpa]
8 Hb_000373_240 0.0650521667 - - PREDICTED: uncharacterized protein LOC105640940 isoform X1 [Jatropha curcas]
9 Hb_001006_140 0.0696797311 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 19 isoform X2 [Jatropha curcas]
10 Hb_000815_210 0.0703640635 - - uncoupling protein 3, partial [Manihot esculenta]
11 Hb_003010_030 0.0708297911 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
12 Hb_003642_060 0.0709573132 - - hypothetical protein RCOM_1189860 [Ricinus communis]
13 Hb_001195_760 0.0718818966 - - PREDICTED: 30S ribosomal protein S9, chloroplastic-like [Populus euphratica]
14 Hb_000926_280 0.072322877 - - ubiquitin-activating enzyme E1, putative [Ricinus communis]
15 Hb_000943_070 0.0725028169 - - PREDICTED: uncharacterized protein LOC105635592 isoform X1 [Jatropha curcas]
16 Hb_031939_010 0.0747293555 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
17 Hb_000327_120 0.0749910851 - - FGFR1 oncogene partner, putative [Ricinus communis]
18 Hb_150360_030 0.0759311741 - - PREDICTED: F-box/WD-40 repeat-containing protein At3g52030-like [Jatropha curcas]
19 Hb_003030_070 0.0761640757 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
20 Hb_011673_030 0.0763145167 - - hypothetical protein JCGZ_22219 [Jatropha curcas]

Gene co-expression network

sample Hb_003406_010 Hb_003406_010 Hb_000089_220 Hb_000089_220 Hb_003406_010--Hb_000089_220 Hb_002391_300 Hb_002391_300 Hb_003406_010--Hb_002391_300 Hb_005245_130 Hb_005245_130 Hb_003406_010--Hb_005245_130 Hb_004096_030 Hb_004096_030 Hb_003406_010--Hb_004096_030 Hb_007218_080 Hb_007218_080 Hb_003406_010--Hb_007218_080 Hb_000645_050 Hb_000645_050 Hb_003406_010--Hb_000645_050 Hb_006185_050 Hb_006185_050 Hb_000089_220--Hb_006185_050 Hb_003642_060 Hb_003642_060 Hb_000089_220--Hb_003642_060 Hb_003001_140 Hb_003001_140 Hb_000089_220--Hb_003001_140 Hb_003010_030 Hb_003010_030 Hb_000089_220--Hb_003010_030 Hb_000926_280 Hb_000926_280 Hb_000089_220--Hb_000926_280 Hb_000373_240 Hb_000373_240 Hb_002391_300--Hb_000373_240 Hb_002391_300--Hb_000926_280 Hb_004440_090 Hb_004440_090 Hb_002391_300--Hb_004440_090 Hb_012092_010 Hb_012092_010 Hb_002391_300--Hb_012092_010 Hb_002391_300--Hb_007218_080 Hb_004934_090 Hb_004934_090 Hb_005245_130--Hb_004934_090 Hb_000803_300 Hb_000803_300 Hb_005245_130--Hb_000803_300 Hb_005245_130--Hb_004096_030 Hb_005276_210 Hb_005276_210 Hb_005245_130--Hb_005276_210 Hb_031939_010 Hb_031939_010 Hb_005245_130--Hb_031939_010 Hb_004096_030--Hb_004934_090 Hb_001019_230 Hb_001019_230 Hb_004096_030--Hb_001019_230 Hb_000134_090 Hb_000134_090 Hb_004096_030--Hb_000134_090 Hb_002030_030 Hb_002030_030 Hb_004096_030--Hb_002030_030 Hb_004310_130 Hb_004310_130 Hb_007218_080--Hb_004310_130 Hb_001369_180 Hb_001369_180 Hb_007218_080--Hb_001369_180 Hb_150360_030 Hb_150360_030 Hb_007218_080--Hb_150360_030 Hb_003030_070 Hb_003030_070 Hb_007218_080--Hb_003030_070 Hb_054865_100 Hb_054865_100 Hb_000645_050--Hb_054865_100 Hb_000327_120 Hb_000327_120 Hb_000645_050--Hb_000327_120 Hb_000645_050--Hb_001369_180 Hb_000645_050--Hb_003030_070 Hb_000645_050--Hb_007218_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.0838 11.4537 10.0551 8.04661 24.9728 27.9103
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.6915 19.1466 16.0988 8.35087 9.02161

CAGE analysis