Hb_003408_030

Information

Type -
Description -
Location Contig3408: 52534-54701
Sequence    

Annotation

kegg
ID rcu:RCOM_1287280
description Protein YIF1A, putative
nr
ID XP_012065189.1
description PREDICTED: protein YIF1B [Jatropha curcas]
swissprot
ID Q6GN58
description Protein YIF1B-A OS=Xenopus laevis GN=yif1b-a PE=2 SV=1
trembl
ID A0A067L622
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20867 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35633: 51368-51679
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003408_030 0.0 - - PREDICTED: protein YIF1B [Jatropha curcas]
2 Hb_000753_130 0.0630084975 - - PREDICTED: uncharacterized protein LOC105640673 [Jatropha curcas]
3 Hb_003376_120 0.0701321948 - - PREDICTED: cell number regulator 8 [Jatropha curcas]
4 Hb_000861_040 0.073023148 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Jatropha curcas]
5 Hb_002527_070 0.0777480065 - - axonemal dynein light chain, putative [Ricinus communis]
6 Hb_007924_020 0.0852509982 - - PREDICTED: chaperonin CPN60-like 2, mitochondrial isoform X2 [Jatropha curcas]
7 Hb_000627_120 0.0864829722 - - PREDICTED: probable adenylate kinase 7, mitochondrial [Jatropha curcas]
8 Hb_005357_150 0.0905545661 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_000634_100 0.0905733402 - - hypothetical protein PRUPE_ppa013350mg [Prunus persica]
10 Hb_008289_060 0.0909860995 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
11 Hb_131864_040 0.0924707512 - - PREDICTED: uncharacterized protein LOC105649406 isoform X1 [Jatropha curcas]
12 Hb_023386_080 0.0944950905 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
13 Hb_000983_100 0.095051927 - - PREDICTED: AP-4 complex subunit mu isoform X1 [Vitis vinifera]
14 Hb_000059_220 0.0953729311 - - PREDICTED: CBL-interacting protein kinase 2 [Jatropha curcas]
15 Hb_004108_050 0.0968774709 - - PREDICTED: elongation factor Tu, mitochondrial [Jatropha curcas]
16 Hb_000110_160 0.0985058752 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005333_130 0.0989997599 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000836_070 0.0997036913 - - protein binding protein, putative [Ricinus communis]
19 Hb_001329_300 0.1018454018 - - PREDICTED: L-cysteine desulfhydrase [Jatropha curcas]
20 Hb_004951_040 0.1019818081 - - PREDICTED: pentatricopeptide repeat-containing protein At1g31790-like [Jatropha curcas]

Gene co-expression network

sample Hb_003408_030 Hb_003408_030 Hb_000753_130 Hb_000753_130 Hb_003408_030--Hb_000753_130 Hb_003376_120 Hb_003376_120 Hb_003408_030--Hb_003376_120 Hb_000861_040 Hb_000861_040 Hb_003408_030--Hb_000861_040 Hb_002527_070 Hb_002527_070 Hb_003408_030--Hb_002527_070 Hb_007924_020 Hb_007924_020 Hb_003408_030--Hb_007924_020 Hb_000627_120 Hb_000627_120 Hb_003408_030--Hb_000627_120 Hb_027402_070 Hb_027402_070 Hb_000753_130--Hb_027402_070 Hb_000753_130--Hb_002527_070 Hb_008289_060 Hb_008289_060 Hb_000753_130--Hb_008289_060 Hb_000431_010 Hb_000431_010 Hb_000753_130--Hb_000431_010 Hb_001141_280 Hb_001141_280 Hb_000753_130--Hb_001141_280 Hb_000634_100 Hb_000634_100 Hb_003376_120--Hb_000634_100 Hb_023386_080 Hb_023386_080 Hb_003376_120--Hb_023386_080 Hb_044662_070 Hb_044662_070 Hb_003376_120--Hb_044662_070 Hb_003376_120--Hb_007924_020 Hb_003376_120--Hb_000627_120 Hb_002326_030 Hb_002326_030 Hb_000861_040--Hb_002326_030 Hb_000861_040--Hb_002527_070 Hb_007229_060 Hb_007229_060 Hb_000861_040--Hb_007229_060 Hb_026988_020 Hb_026988_020 Hb_000861_040--Hb_026988_020 Hb_000983_100 Hb_000983_100 Hb_000861_040--Hb_000983_100 Hb_001427_120 Hb_001427_120 Hb_002527_070--Hb_001427_120 Hb_001711_030 Hb_001711_030 Hb_002527_070--Hb_001711_030 Hb_002527_070--Hb_000983_100 Hb_002352_010 Hb_002352_010 Hb_002527_070--Hb_002352_010 Hb_000622_040 Hb_000622_040 Hb_007924_020--Hb_000622_040 Hb_007924_020--Hb_044662_070 Hb_007924_020--Hb_008289_060 Hb_000429_170 Hb_000429_170 Hb_007924_020--Hb_000429_170 Hb_002716_070 Hb_002716_070 Hb_000627_120--Hb_002716_070 Hb_000205_270 Hb_000205_270 Hb_000627_120--Hb_000205_270 Hb_000627_120--Hb_044662_070 Hb_009486_130 Hb_009486_130 Hb_000627_120--Hb_009486_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
80.671 19.4902 22.6562 20.0802 71.6924 70.0129
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
108.541 110.136 183.877 32.7708 16.6076

CAGE analysis