Hb_003411_020

Information

Type -
Description -
Location Contig3411: 14668-20723
Sequence    

Annotation

kegg
ID rcu:RCOM_0030540
description alpha-glucosidase, putative (EC:3.2.1.20)
nr
ID XP_002531635.1
description alpha-glucosidase, putative [Ricinus communis]
swissprot
ID Q9S7Y7
description Alpha-xylosidase 1 OS=Arabidopsis thaliana GN=XYL1 PE=1 SV=1
trembl
ID B9T066
description Alpha-glucosidase, putative OS=Ricinus communis GN=RCOM_0030540 PE=3 SV=1
Gene Ontology
ID GO:0004553
description alpha-xylosidase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003411_020 0.0 - - alpha-glucosidase, putative [Ricinus communis]
2 Hb_004079_100 0.0987384039 - - PREDICTED: uncharacterized protein LOC105637705 [Jatropha curcas]
3 Hb_007479_080 0.1091862265 - - PREDICTED: uncharacterized protein LOC105649774 isoform X1 [Jatropha curcas]
4 Hb_008566_080 0.1105990519 - - PREDICTED: uncharacterized protein LOC105647834 [Jatropha curcas]
5 Hb_002999_080 0.1176020946 transcription factor TF Family: G2-like PREDICTED: accessory gland protein Acp36DE [Jatropha curcas]
6 Hb_001677_090 0.1176615504 - - PREDICTED: CASP-like protein 5B2 [Jatropha curcas]
7 Hb_000398_140 0.1181858242 - - PREDICTED: methionine S-methyltransferase [Jatropha curcas]
8 Hb_007625_030 0.1194838661 - - unknown [Medicago truncatula]
9 Hb_000003_020 0.1217817509 - - PREDICTED: uncharacterized protein LOC105631161 [Jatropha curcas]
10 Hb_005357_120 0.1233492424 transcription factor TF Family: MYB-related -
11 Hb_000914_150 0.1234233679 - - ADP,ATP carrier protein, putative [Ricinus communis]
12 Hb_000645_160 0.1239609471 - - protein translocase, putative [Ricinus communis]
13 Hb_000120_320 0.124249434 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_003656_090 0.1256568856 - - PREDICTED: protein Brevis radix-like 4 [Jatropha curcas]
15 Hb_001440_010 0.1257769102 - - PREDICTED: armadillo repeat-containing kinesin-like protein 1 [Populus euphratica]
16 Hb_029142_040 0.1257846919 - - replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis]
17 Hb_002641_140 0.1258730525 - - protein phosphatase 2c, putative [Ricinus communis]
18 Hb_001776_100 0.1273193343 - - PREDICTED: outer envelope pore protein 16, chloroplastic [Jatropha curcas]
19 Hb_004421_010 0.1281432902 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
20 Hb_000997_240 0.1283135501 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA4, putative [Ricinus communis]

Gene co-expression network

sample Hb_003411_020 Hb_003411_020 Hb_004079_100 Hb_004079_100 Hb_003411_020--Hb_004079_100 Hb_007479_080 Hb_007479_080 Hb_003411_020--Hb_007479_080 Hb_008566_080 Hb_008566_080 Hb_003411_020--Hb_008566_080 Hb_002999_080 Hb_002999_080 Hb_003411_020--Hb_002999_080 Hb_001677_090 Hb_001677_090 Hb_003411_020--Hb_001677_090 Hb_000398_140 Hb_000398_140 Hb_003411_020--Hb_000398_140 Hb_022250_160 Hb_022250_160 Hb_004079_100--Hb_022250_160 Hb_011129_020 Hb_011129_020 Hb_004079_100--Hb_011129_020 Hb_004079_100--Hb_008566_080 Hb_000120_320 Hb_000120_320 Hb_004079_100--Hb_000120_320 Hb_000594_160 Hb_000594_160 Hb_004079_100--Hb_000594_160 Hb_012787_060 Hb_012787_060 Hb_007479_080--Hb_012787_060 Hb_000342_020 Hb_000342_020 Hb_007479_080--Hb_000342_020 Hb_001269_400 Hb_001269_400 Hb_007479_080--Hb_001269_400 Hb_002151_020 Hb_002151_020 Hb_007479_080--Hb_002151_020 Hb_001048_070 Hb_001048_070 Hb_007479_080--Hb_001048_070 Hb_007386_030 Hb_007386_030 Hb_008566_080--Hb_007386_030 Hb_000011_370 Hb_000011_370 Hb_008566_080--Hb_000011_370 Hb_000014_080 Hb_000014_080 Hb_008566_080--Hb_000014_080 Hb_008566_080--Hb_022250_160 Hb_000997_240 Hb_000997_240 Hb_002999_080--Hb_000997_240 Hb_000866_320 Hb_000866_320 Hb_002999_080--Hb_000866_320 Hb_155444_010 Hb_155444_010 Hb_002999_080--Hb_155444_010 Hb_000645_160 Hb_000645_160 Hb_002999_080--Hb_000645_160 Hb_000563_630 Hb_000563_630 Hb_002999_080--Hb_000563_630 Hb_001677_090--Hb_000120_320 Hb_149055_010 Hb_149055_010 Hb_001677_090--Hb_149055_010 Hb_008175_050 Hb_008175_050 Hb_001677_090--Hb_008175_050 Hb_001138_070 Hb_001138_070 Hb_001677_090--Hb_001138_070 Hb_033772_060 Hb_033772_060 Hb_001677_090--Hb_033772_060 Hb_001677_090--Hb_000011_370 Hb_004421_010 Hb_004421_010 Hb_000398_140--Hb_004421_010 Hb_059000_010 Hb_059000_010 Hb_000398_140--Hb_059000_010 Hb_001141_160 Hb_001141_160 Hb_000398_140--Hb_001141_160 Hb_001189_100 Hb_001189_100 Hb_000398_140--Hb_001189_100 Hb_004122_060 Hb_004122_060 Hb_000398_140--Hb_004122_060 Hb_012743_020 Hb_012743_020 Hb_000398_140--Hb_012743_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0320348 1.44376 1.77045 3.80231 0.0930475 0.00632759
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0770939 0.133466 0.023187 2.04115 1.42227

CAGE analysis