Hb_003411_030

Information

Type -
Description -
Location Contig3411: 70801-71343
Sequence    

Annotation

kegg
ID pop:POPTR_0010s13590g
description POPTRDRAFT_566632; hypothetical protein
nr
ID XP_002314864.1
description hypothetical protein POPTR_0010s13590g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID A9P995
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s13590g PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003411_030 0.0 - - hypothetical protein POPTR_0010s13590g [Populus trichocarpa]
2 Hb_004774_020 0.1168058885 - - PREDICTED: PRA1 family protein B4-like [Camelina sativa]
3 Hb_003925_040 0.1191386704 transcription factor TF Family: C2H2 PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 [Jatropha curcas]
4 Hb_004108_240 0.119867505 - - hypothetical protein POPTR_0002s05550g [Populus trichocarpa]
5 Hb_000953_050 0.1239413065 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105629451 [Jatropha curcas]
6 Hb_011631_010 0.1384868649 - - PREDICTED: uncharacterized protein LOC105641795 [Jatropha curcas]
7 Hb_001437_010 0.1410344226 - - PREDICTED: probable receptor-like protein kinase At1g33260 [Jatropha curcas]
8 Hb_012107_010 0.1412391757 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
9 Hb_000056_170 0.1416059088 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000905_210 0.1447769938 - - PREDICTED: protein gar2 [Jatropha curcas]
11 Hb_005496_180 0.1468878727 - - PREDICTED: U-box domain-containing protein 4-like [Jatropha curcas]
12 Hb_028207_040 0.1470734735 - - PREDICTED: beta-hexosaminidase 2 [Jatropha curcas]
13 Hb_003777_110 0.1477441736 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 8 [Jatropha curcas]
14 Hb_124677_040 0.1484168715 - - PREDICTED: uncharacterized protein LOC105650471 [Jatropha curcas]
15 Hb_002053_130 0.1489736583 - - UDP-glucose 4-epimerase, putative [Ricinus communis]
16 Hb_004899_040 0.1511886335 transcription factor TF Family: ARF Auxin response factor [Medicago truncatula]
17 Hb_000215_350 0.1522912867 - - PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]
18 Hb_001766_020 0.1524750751 - - PREDICTED: probable galacturonosyltransferase 14 [Populus euphratica]
19 Hb_003018_040 0.1541249258 transcription factor TF Family: C3H conserved hypothetical protein [Ricinus communis]
20 Hb_000205_240 0.1550908948 - - ubiquitin-protein ligase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003411_030 Hb_003411_030 Hb_004774_020 Hb_004774_020 Hb_003411_030--Hb_004774_020 Hb_003925_040 Hb_003925_040 Hb_003411_030--Hb_003925_040 Hb_004108_240 Hb_004108_240 Hb_003411_030--Hb_004108_240 Hb_000953_050 Hb_000953_050 Hb_003411_030--Hb_000953_050 Hb_011631_010 Hb_011631_010 Hb_003411_030--Hb_011631_010 Hb_001437_010 Hb_001437_010 Hb_003411_030--Hb_001437_010 Hb_004774_020--Hb_003925_040 Hb_002042_170 Hb_002042_170 Hb_004774_020--Hb_002042_170 Hb_002900_120 Hb_002900_120 Hb_004774_020--Hb_002900_120 Hb_001439_230 Hb_001439_230 Hb_004774_020--Hb_001439_230 Hb_124677_040 Hb_124677_040 Hb_004774_020--Hb_124677_040 Hb_000699_210 Hb_000699_210 Hb_004774_020--Hb_000699_210 Hb_003147_060 Hb_003147_060 Hb_003925_040--Hb_003147_060 Hb_084490_010 Hb_084490_010 Hb_003925_040--Hb_084490_010 Hb_009545_090 Hb_009545_090 Hb_003925_040--Hb_009545_090 Hb_003925_040--Hb_004108_240 Hb_003925_040--Hb_002042_170 Hb_004108_240--Hb_124677_040 Hb_000045_260 Hb_000045_260 Hb_004108_240--Hb_000045_260 Hb_001376_010 Hb_001376_010 Hb_004108_240--Hb_001376_010 Hb_004108_240--Hb_003147_060 Hb_004108_240--Hb_004774_020 Hb_028207_040 Hb_028207_040 Hb_000953_050--Hb_028207_040 Hb_005496_180 Hb_005496_180 Hb_000953_050--Hb_005496_180 Hb_003055_140 Hb_003055_140 Hb_000953_050--Hb_003055_140 Hb_002572_050 Hb_002572_050 Hb_000953_050--Hb_002572_050 Hb_009028_010 Hb_009028_010 Hb_000953_050--Hb_009028_010 Hb_001629_060 Hb_001629_060 Hb_000953_050--Hb_001629_060 Hb_011631_010--Hb_000045_260 Hb_002897_050 Hb_002897_050 Hb_011631_010--Hb_002897_050 Hb_005499_010 Hb_005499_010 Hb_011631_010--Hb_005499_010 Hb_002107_060 Hb_002107_060 Hb_011631_010--Hb_002107_060 Hb_000638_280 Hb_000638_280 Hb_011631_010--Hb_000638_280 Hb_000084_240 Hb_000084_240 Hb_011631_010--Hb_000084_240 Hb_048755_020 Hb_048755_020 Hb_001437_010--Hb_048755_020 Hb_007313_070 Hb_007313_070 Hb_001437_010--Hb_007313_070 Hb_000186_200 Hb_000186_200 Hb_001437_010--Hb_000186_200 Hb_002701_210 Hb_002701_210 Hb_001437_010--Hb_002701_210 Hb_000071_140 Hb_000071_140 Hb_001437_010--Hb_000071_140 Hb_001437_010--Hb_004108_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
73.2925 275.495 98.3193 103.023 49.8507 26.5887
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.2799 107.822 64.5559 36.3515 72.3872

CAGE analysis