Hb_003413_010

Information

Type -
Description -
Location Contig3413: 23240-25889
Sequence    

Annotation

kegg
ID pda:103700002
description uncharacterized LOC103700002
nr
ID WP_042943005.1
description hypothetical protein, partial [Pseudomonas fluorescens]
swissprot
ID -
description -
trembl
ID A0A0D2PYA6
description Gossypium raimondii chromosome 8, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_008G198600 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003413_010 0.0 - - hypothetical protein, partial [Pseudomonas fluorescens]
2 Hb_000136_080 0.1279740372 - - hypothetical protein AALP_AA8G499800 [Arabis alpina]
3 Hb_000975_260 0.1726283438 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000505_120 0.1957851104 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
5 Hb_011280_020 0.2097877233 - - polyprotein [Oryza australiensis]
6 Hb_070905_010 0.2234175157 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
7 Hb_001174_050 0.226923835 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_001355_060 0.2366948557 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
9 Hb_015076_020 0.2426807121 - - IMP dehydrogenase/GMP reductase [Hevea brasiliensis]
10 Hb_008783_010 0.242870036 - - -
11 Hb_002013_030 0.2448418021 - - PREDICTED: uncharacterized protein LOC104799692 [Tarenaya hassleriana]
12 Hb_000269_040 0.2500235786 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
13 Hb_004899_210 0.2502869953 - - PREDICTED: respiratory burst oxidase homolog protein E [Jatropha curcas]
14 Hb_000061_110 0.2506528697 - - -
15 Hb_102602_020 0.2513261153 - - hypothetical protein B456_001G166300 [Gossypium raimondii]
16 Hb_003183_010 0.257154704 - - PREDICTED: uncharacterized protein LOC105785048, partial [Gossypium raimondii]
17 Hb_003900_040 0.2580973781 - - hypothetical protein [Lotus japonicus]
18 Hb_001452_090 0.2586952416 - - PREDICTED: serine carboxypeptidase II-3-like [Vitis vinifera]
19 Hb_129046_010 0.2600278592 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Elaeis guineensis]
20 Hb_039547_010 0.2621111303 - - PREDICTED: equilibrative nucleotide transporter 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_003413_010 Hb_003413_010 Hb_000136_080 Hb_000136_080 Hb_003413_010--Hb_000136_080 Hb_000975_260 Hb_000975_260 Hb_003413_010--Hb_000975_260 Hb_000505_120 Hb_000505_120 Hb_003413_010--Hb_000505_120 Hb_011280_020 Hb_011280_020 Hb_003413_010--Hb_011280_020 Hb_070905_010 Hb_070905_010 Hb_003413_010--Hb_070905_010 Hb_001174_050 Hb_001174_050 Hb_003413_010--Hb_001174_050 Hb_003900_040 Hb_003900_040 Hb_000136_080--Hb_003900_040 Hb_004899_210 Hb_004899_210 Hb_000136_080--Hb_004899_210 Hb_000136_080--Hb_001174_050 Hb_159124_010 Hb_159124_010 Hb_000136_080--Hb_159124_010 Hb_179183_010 Hb_179183_010 Hb_000136_080--Hb_179183_010 Hb_000975_260--Hb_070905_010 Hb_001355_060 Hb_001355_060 Hb_000975_260--Hb_001355_060 Hb_000228_230 Hb_000228_230 Hb_000975_260--Hb_000228_230 Hb_000061_110 Hb_000061_110 Hb_000975_260--Hb_000061_110 Hb_003649_030 Hb_003649_030 Hb_000975_260--Hb_003649_030 Hb_000505_120--Hb_011280_020 Hb_008783_010 Hb_008783_010 Hb_000505_120--Hb_008783_010 Hb_015076_020 Hb_015076_020 Hb_000505_120--Hb_015076_020 Hb_004241_030 Hb_004241_030 Hb_000505_120--Hb_004241_030 Hb_097006_010 Hb_097006_010 Hb_000505_120--Hb_097006_010 Hb_011280_020--Hb_008783_010 Hb_011280_020--Hb_015076_020 Hb_083663_010 Hb_083663_010 Hb_011280_020--Hb_083663_010 Hb_011280_020--Hb_004241_030 Hb_070905_010--Hb_000228_230 Hb_000383_020 Hb_000383_020 Hb_070905_010--Hb_000383_020 Hb_070905_010--Hb_003649_030 Hb_005306_020 Hb_005306_020 Hb_070905_010--Hb_005306_020 Hb_001174_050--Hb_001355_060 Hb_001174_050--Hb_159124_010 Hb_005432_020 Hb_005432_020 Hb_001174_050--Hb_005432_020 Hb_101034_010 Hb_101034_010 Hb_001174_050--Hb_101034_010 Hb_181013_010 Hb_181013_010 Hb_001174_050--Hb_181013_010 Hb_000142_090 Hb_000142_090 Hb_001174_050--Hb_000142_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0302917 0.0900803 0 0.0155482 0 0.00883725
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0502967 0.228874

CAGE analysis