Hb_003414_020

Information

Type -
Description -
Location Contig3414: 54431-62891
Sequence    

Annotation

kegg
ID zma:103655285
description uncharacterized LOC103655285
nr
ID XP_008680288.1
description PREDICTED: uncharacterized protein LOC103655285 [Zea mays]
swissprot
ID -
description -
trembl
ID A0A061ERZ8
description Uncharacterized protein OS=Theobroma cacao GN=TCM_021998 PE=4 SV=1
Gene Ontology
ID GO:0003676
description retrotransposon unclassified

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35675: 60687-60796
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003414_020 0.0 - - PREDICTED: uncharacterized protein LOC103655285 [Zea mays]
2 Hb_001761_160 0.0556555463 - - hypothetical protein VITISV_019364 [Vitis vinifera]
3 Hb_002553_030 0.115633458 - - hypothetical protein POPTR_0008s16550g [Populus trichocarpa]
4 Hb_000108_030 0.1167511297 - - -
5 Hb_002260_210 0.1167515951 - - unnamed protein product [Vitis vinifera]
6 Hb_000710_110 0.1169264427 - - Vps51/Vps67 [Citrus endogenous pararetrovirus]
7 Hb_006221_020 0.1173674655 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
8 Hb_010023_020 0.1212794605 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_006617_030 0.121316052 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
10 Hb_000311_130 0.1214796195 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
11 Hb_002020_030 0.1216043602 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
12 Hb_030085_050 0.1218829098 - - PREDICTED: uncharacterized protein LOC105797448 [Gossypium raimondii]
13 Hb_000266_070 0.1219747889 desease resistance Gene Name: NB-ARC PREDICTED: uncharacterized protein LOC105765578 [Gossypium raimondii]
14 Hb_159777_010 0.1223466692 - - JHL22C18.10 [Jatropha curcas]
15 Hb_010623_010 0.1225529406 - - PREDICTED: uncharacterized protein LOC105643732 [Jatropha curcas]
16 Hb_073373_010 0.1227756728 - - hypothetical protein JCGZ_11284 [Jatropha curcas]
17 Hb_000710_100 0.1229214682 - - PREDICTED: uncharacterized protein LOC101496717 [Cicer arietinum]
18 Hb_041626_010 0.1229538755 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
19 Hb_000206_260 0.1238584296 - - cysteine protease, putative [Ricinus communis]
20 Hb_104984_010 0.1241555981 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]

Gene co-expression network

sample Hb_003414_020 Hb_003414_020 Hb_001761_160 Hb_001761_160 Hb_003414_020--Hb_001761_160 Hb_002553_030 Hb_002553_030 Hb_003414_020--Hb_002553_030 Hb_000108_030 Hb_000108_030 Hb_003414_020--Hb_000108_030 Hb_002260_210 Hb_002260_210 Hb_003414_020--Hb_002260_210 Hb_000710_110 Hb_000710_110 Hb_003414_020--Hb_000710_110 Hb_006221_020 Hb_006221_020 Hb_003414_020--Hb_006221_020 Hb_184798_060 Hb_184798_060 Hb_001761_160--Hb_184798_060 Hb_001761_160--Hb_002553_030 Hb_000208_220 Hb_000208_220 Hb_001761_160--Hb_000208_220 Hb_004924_040 Hb_004924_040 Hb_001761_160--Hb_004924_040 Hb_003058_160 Hb_003058_160 Hb_001761_160--Hb_003058_160 Hb_002553_030--Hb_000208_220 Hb_001508_010 Hb_001508_010 Hb_002553_030--Hb_001508_010 Hb_000373_140 Hb_000373_140 Hb_002553_030--Hb_000373_140 Hb_002553_030--Hb_184798_060 Hb_000108_030--Hb_002260_210 Hb_000108_030--Hb_000710_110 Hb_000108_030--Hb_006221_020 Hb_000311_130 Hb_000311_130 Hb_000108_030--Hb_000311_130 Hb_010023_020 Hb_010023_020 Hb_000108_030--Hb_010023_020 Hb_006617_030 Hb_006617_030 Hb_000108_030--Hb_006617_030 Hb_002260_210--Hb_000710_110 Hb_002260_210--Hb_006221_020 Hb_002260_210--Hb_000311_130 Hb_002260_210--Hb_010023_020 Hb_002260_210--Hb_006617_030 Hb_000710_110--Hb_006221_020 Hb_000710_110--Hb_010023_020 Hb_000710_110--Hb_006617_030 Hb_002020_030 Hb_002020_030 Hb_000710_110--Hb_002020_030 Hb_006221_020--Hb_010023_020 Hb_006221_020--Hb_006617_030 Hb_006221_020--Hb_002020_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0324517 0.00607099 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.186428

CAGE analysis