Hb_003414_040

Information

Type -
Description -
Location Contig3414: 64911-74975
Sequence    

Annotation

kegg
ID tcc:TCM_024268
description hypothetical protein
nr
ID CAN61858.1
description hypothetical protein VITISV_016691 [Vitis vinifera]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID A5BW61
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016691 PE=4 SV=1
Gene Ontology
ID GO:0046872
description cysteine-rich rlk (receptor-like protein kinase) 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003414_040 0.0 - - hypothetical protein VITISV_016691 [Vitis vinifera]
2 Hb_000432_020 0.0968536576 desease resistance Gene Name: Tropomyosin_1 PREDICTED: putative disease resistance protein RGA1 isoform X2 [Jatropha curcas]
3 Hb_001383_080 0.1121704456 - - OSJNBa0019D11.8 [Oryza sativa Japonica Group]
4 Hb_093388_010 0.1146983388 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
5 Hb_001250_030 0.1161228086 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003311_020 0.1209696158 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001793_040 0.1305164871 - - hypothetical protein VITISV_006810 [Vitis vinifera]
8 Hb_007533_050 0.1340800345 - - -
9 Hb_023738_010 0.1344127892 - - Concanavalin A-like lectin protein kinase family protein [Theobroma cacao]
10 Hb_005678_030 0.1436699436 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
11 Hb_032016_010 0.1521221607 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040-like isoform X1 [Citrus sinensis]
12 Hb_000522_030 0.1529987897 - - hypothetical protein VITISV_006017 [Vitis vinifera]
13 Hb_151401_010 0.1538087758 - - -
14 Hb_001490_020 0.1539322869 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
15 Hb_004374_090 0.1564415603 transcription factor TF Family: HB PREDICTED: homeobox protein BEL1 homolog [Populus euphratica]
16 Hb_011649_030 0.1578904179 - - hypothetical protein [Vitis hybrid cultivar]
17 Hb_001385_070 0.1582833836 - - hypothetical protein VITISV_019194 [Vitis vinifera]
18 Hb_019654_170 0.1601941203 transcription factor TF Family: ARID PREDICTED: high mobility group B protein 9 [Jatropha curcas]
19 Hb_009851_090 0.1605065725 - - Protein ABIL2, putative [Ricinus communis]
20 Hb_144838_010 0.1616369873 - - hypothetical protein JCGZ_08246 [Jatropha curcas]

Gene co-expression network

sample Hb_003414_040 Hb_003414_040 Hb_000432_020 Hb_000432_020 Hb_003414_040--Hb_000432_020 Hb_001383_080 Hb_001383_080 Hb_003414_040--Hb_001383_080 Hb_093388_010 Hb_093388_010 Hb_003414_040--Hb_093388_010 Hb_001250_030 Hb_001250_030 Hb_003414_040--Hb_001250_030 Hb_003311_020 Hb_003311_020 Hb_003414_040--Hb_003311_020 Hb_001793_040 Hb_001793_040 Hb_003414_040--Hb_001793_040 Hb_007533_050 Hb_007533_050 Hb_000432_020--Hb_007533_050 Hb_000432_020--Hb_003311_020 Hb_000432_020--Hb_093388_010 Hb_151401_010 Hb_151401_010 Hb_000432_020--Hb_151401_010 Hb_000432_020--Hb_001250_030 Hb_001383_080--Hb_001250_030 Hb_019654_170 Hb_019654_170 Hb_001383_080--Hb_019654_170 Hb_001383_080--Hb_000432_020 Hb_000346_050 Hb_000346_050 Hb_001383_080--Hb_000346_050 Hb_003900_040 Hb_003900_040 Hb_001383_080--Hb_003900_040 Hb_093388_010--Hb_001250_030 Hb_029510_060 Hb_029510_060 Hb_093388_010--Hb_029510_060 Hb_023738_010 Hb_023738_010 Hb_093388_010--Hb_023738_010 Hb_005678_030 Hb_005678_030 Hb_093388_010--Hb_005678_030 Hb_001250_030--Hb_029510_060 Hb_001250_030--Hb_023738_010 Hb_001250_030--Hb_003311_020 Hb_003994_070 Hb_003994_070 Hb_003311_020--Hb_003994_070 Hb_000567_270 Hb_000567_270 Hb_003311_020--Hb_000567_270 Hb_032016_010 Hb_032016_010 Hb_003311_020--Hb_032016_010 Hb_009851_090 Hb_009851_090 Hb_003311_020--Hb_009851_090 Hb_003311_020--Hb_007533_050 Hb_001385_070 Hb_001385_070 Hb_001793_040--Hb_001385_070 Hb_001793_040--Hb_005678_030 Hb_011649_030 Hb_011649_030 Hb_001793_040--Hb_011649_030 Hb_127552_050 Hb_127552_050 Hb_001793_040--Hb_127552_050 Hb_020831_070 Hb_020831_070 Hb_001793_040--Hb_020831_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0907971 0.0432927 0.0442924 0 0.0125553
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.00512867 0 0.0932886 0.983216

CAGE analysis