Hb_003414_050

Information

Type -
Description -
Location Contig3414: 85072-85995
Sequence    

Annotation

kegg
ID pop:POPTR_0005s07110g
description POPTRDRAFT_1077288; hypothetical protein
nr
ID XP_012079815.1
description PREDICTED: uncharacterized protein LOC105640180 isoform X3 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K8V9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15348 PE=4 SV=1
Gene Ontology
ID GO:0008270
description zinc finger family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35673: 22098-86813
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003414_050 0.0 - - PREDICTED: uncharacterized protein LOC105640180 isoform X3 [Jatropha curcas]
2 Hb_003671_020 0.0611514116 - - calcineurin B, putative [Ricinus communis]
3 Hb_009615_070 0.0690457608 - - type X protein phosphatase-II [Populus trichocarpa]
4 Hb_000701_100 0.0783190675 - - PREDICTED: ribose-phosphate pyrophosphokinase 1 [Jatropha curcas]
5 Hb_000125_100 0.0796698169 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105635070 [Jatropha curcas]
6 Hb_000483_390 0.0813977448 - - PREDICTED: vesicle-associated protein 2-1 [Jatropha curcas]
7 Hb_007009_010 0.0832249629 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At3g05675 [Populus euphratica]
8 Hb_023278_020 0.089149823 - - Peroxin 3 isoform 1 [Theobroma cacao]
9 Hb_002375_070 0.0909339795 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004899_370 0.0918589611 - - hypothetical protein CICLE_v10009013mg [Citrus clementina]
11 Hb_029388_030 0.0922845965 - - PREDICTED: uncharacterized protein LOC105647324 [Jatropha curcas]
12 Hb_001205_150 0.093004961 - - Uncharacterized protein TCM_000403 [Theobroma cacao]
13 Hb_000406_080 0.0930387082 - - PREDICTED: trafficking protein particle complex subunit 6B [Jatropha curcas]
14 Hb_000805_240 0.0931233505 - - PREDICTED: uncharacterized protein C20orf24 homolog [Jatropha curcas]
15 Hb_001057_040 0.0934853479 - - PREDICTED: oligosaccharyltransferase complex subunit ostc [Jatropha curcas]
16 Hb_004102_110 0.0937855601 - - Monothiol glutaredoxin-4, putative [Ricinus communis]
17 Hb_000656_170 0.0940403431 - - lsm1, putative [Ricinus communis]
18 Hb_000985_060 0.0947149608 - - PREDICTED: protein transport protein SFT2-like isoform X1 [Jatropha curcas]
19 Hb_000005_090 0.0953589827 - - hypothetical protein CICLE_v10029644mg [Citrus clementina]
20 Hb_001322_150 0.098156006 - - PREDICTED: vesicle-associated protein 2-1 [Jatropha curcas]

Gene co-expression network

sample Hb_003414_050 Hb_003414_050 Hb_003671_020 Hb_003671_020 Hb_003414_050--Hb_003671_020 Hb_009615_070 Hb_009615_070 Hb_003414_050--Hb_009615_070 Hb_000701_100 Hb_000701_100 Hb_003414_050--Hb_000701_100 Hb_000125_100 Hb_000125_100 Hb_003414_050--Hb_000125_100 Hb_000483_390 Hb_000483_390 Hb_003414_050--Hb_000483_390 Hb_007009_010 Hb_007009_010 Hb_003414_050--Hb_007009_010 Hb_003671_020--Hb_000125_100 Hb_029388_030 Hb_029388_030 Hb_003671_020--Hb_029388_030 Hb_002375_070 Hb_002375_070 Hb_003671_020--Hb_002375_070 Hb_003671_020--Hb_009615_070 Hb_000479_190 Hb_000479_190 Hb_003671_020--Hb_000479_190 Hb_023278_020 Hb_023278_020 Hb_009615_070--Hb_023278_020 Hb_003605_090 Hb_003605_090 Hb_009615_070--Hb_003605_090 Hb_009615_070--Hb_007009_010 Hb_004889_010 Hb_004889_010 Hb_009615_070--Hb_004889_010 Hb_004899_370 Hb_004899_370 Hb_009615_070--Hb_004899_370 Hb_089032_030 Hb_089032_030 Hb_009615_070--Hb_089032_030 Hb_001057_040 Hb_001057_040 Hb_000701_100--Hb_001057_040 Hb_000701_100--Hb_004899_370 Hb_000805_240 Hb_000805_240 Hb_000701_100--Hb_000805_240 Hb_005269_080 Hb_005269_080 Hb_000701_100--Hb_005269_080 Hb_000005_090 Hb_000005_090 Hb_000701_100--Hb_000005_090 Hb_092337_010 Hb_092337_010 Hb_000125_100--Hb_092337_010 Hb_001205_150 Hb_001205_150 Hb_000125_100--Hb_001205_150 Hb_000125_100--Hb_009615_070 Hb_000629_120 Hb_000629_120 Hb_000125_100--Hb_000629_120 Hb_114310_080 Hb_114310_080 Hb_000483_390--Hb_114310_080 Hb_000638_170 Hb_000638_170 Hb_000483_390--Hb_000638_170 Hb_011381_080 Hb_011381_080 Hb_000483_390--Hb_011381_080 Hb_000483_390--Hb_003671_020 Hb_028515_010 Hb_028515_010 Hb_000483_390--Hb_028515_010 Hb_000336_240 Hb_000336_240 Hb_007009_010--Hb_000336_240 Hb_007009_010--Hb_003605_090 Hb_003502_090 Hb_003502_090 Hb_007009_010--Hb_003502_090 Hb_010883_050 Hb_010883_050 Hb_007009_010--Hb_010883_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.303 20.334 12.4669 39.2429 17.1137 31.2627
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.872 64.8857 41.9013 14.7763 18.082

CAGE analysis