Hb_003417_010

Information

Type -
Description -
Location Contig3417: 5197-19565
Sequence    

Annotation

kegg
ID rcu:RCOM_1678570
description hypothetical protein
nr
ID XP_012070910.1
description PREDICTED: protein TPLATE [Jatropha curcas]
swissprot
ID F4J8D3
description Protein TPLATE OS=Arabidopsis thaliana GN=TPLATE PE=1 SV=1
trembl
ID A0A067LD62
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10162 PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein tplate

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35703: 5561-5962 , PASA_asmbl_35705: 10135-19495 , PASA_asmbl_35706: 15055-16551 , PASA_asmbl_35707: 17439-17963
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003417_010 0.0 - - PREDICTED: protein TPLATE [Jatropha curcas]
2 Hb_000183_050 0.0735097836 - - PREDICTED: alpha-mannosidase 2 [Jatropha curcas]
3 Hb_001821_150 0.076100052 - - PREDICTED: potassium transporter 7-like [Jatropha curcas]
4 Hb_000284_230 0.0802026389 - - PREDICTED: uncharacterized protein At5g49945-like [Jatropha curcas]
5 Hb_000066_150 0.0805680421 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
6 Hb_000494_050 0.0816948624 - - cationic amino acid transporter, putative [Ricinus communis]
7 Hb_001195_470 0.0827924591 - - PREDICTED: uncharacterized membrane protein At1g75140 [Jatropha curcas]
8 Hb_002675_030 0.0830757911 - - coatomer beta subunit, putative [Ricinus communis]
9 Hb_001440_020 0.0841215921 - - exocyst componenet sec8, putative [Ricinus communis]
10 Hb_006839_010 0.085541876 - - PREDICTED: importin subunit beta-1-like [Jatropha curcas]
11 Hb_000123_180 0.0855705227 - - 2-oxoglutarate dehydrogenase, putative [Ricinus communis]
12 Hb_002817_060 0.0855853201 - - PREDICTED: coatomer subunit alpha-1 [Jatropha curcas]
13 Hb_004019_120 0.0856931295 - - PREDICTED: conserved oligomeric Golgi complex subunit 1 [Jatropha curcas]
14 Hb_012055_040 0.0869811015 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
15 Hb_004410_120 0.0872919828 - - PREDICTED: uncharacterized protein LOC105633877 isoform X1 [Jatropha curcas]
16 Hb_001437_190 0.0887160295 - - ABC transporter family protein [Hevea brasiliensis]
17 Hb_007982_030 0.0906106223 - - PREDICTED: probable inactive receptor kinase At5g10020 isoform X1 [Jatropha curcas]
18 Hb_001377_350 0.0909328517 - - PREDICTED: exportin-2 [Jatropha curcas]
19 Hb_000264_350 0.0911253191 - - PREDICTED: uncharacterized protein LOC105649541 [Jatropha curcas]
20 Hb_008511_020 0.0912112965 - - PREDICTED: coatomer subunit gamma-2 [Jatropha curcas]

Gene co-expression network

sample Hb_003417_010 Hb_003417_010 Hb_000183_050 Hb_000183_050 Hb_003417_010--Hb_000183_050 Hb_001821_150 Hb_001821_150 Hb_003417_010--Hb_001821_150 Hb_000284_230 Hb_000284_230 Hb_003417_010--Hb_000284_230 Hb_000066_150 Hb_000066_150 Hb_003417_010--Hb_000066_150 Hb_000494_050 Hb_000494_050 Hb_003417_010--Hb_000494_050 Hb_001195_470 Hb_001195_470 Hb_003417_010--Hb_001195_470 Hb_015978_100 Hb_015978_100 Hb_000183_050--Hb_015978_100 Hb_000086_690 Hb_000086_690 Hb_000183_050--Hb_000086_690 Hb_011202_020 Hb_011202_020 Hb_000183_050--Hb_011202_020 Hb_001235_230 Hb_001235_230 Hb_000183_050--Hb_001235_230 Hb_000035_410 Hb_000035_410 Hb_000183_050--Hb_000035_410 Hb_000161_210 Hb_000161_210 Hb_001821_150--Hb_000161_210 Hb_000130_180 Hb_000130_180 Hb_001821_150--Hb_000130_180 Hb_002284_250 Hb_002284_250 Hb_001821_150--Hb_002284_250 Hb_003038_040 Hb_003038_040 Hb_001821_150--Hb_003038_040 Hb_007982_030 Hb_007982_030 Hb_001821_150--Hb_007982_030 Hb_002475_040 Hb_002475_040 Hb_000284_230--Hb_002475_040 Hb_001194_020 Hb_001194_020 Hb_000284_230--Hb_001194_020 Hb_000358_100 Hb_000358_100 Hb_000284_230--Hb_000358_100 Hb_008397_010 Hb_008397_010 Hb_000284_230--Hb_008397_010 Hb_073973_150 Hb_073973_150 Hb_000284_230--Hb_073973_150 Hb_006355_020 Hb_006355_020 Hb_000284_230--Hb_006355_020 Hb_012055_110 Hb_012055_110 Hb_000066_150--Hb_012055_110 Hb_002007_110 Hb_002007_110 Hb_000066_150--Hb_002007_110 Hb_010315_020 Hb_010315_020 Hb_000066_150--Hb_010315_020 Hb_000358_220 Hb_000358_220 Hb_000066_150--Hb_000358_220 Hb_000172_340 Hb_000172_340 Hb_000066_150--Hb_000172_340 Hb_004032_200 Hb_004032_200 Hb_000066_150--Hb_004032_200 Hb_000123_180 Hb_000123_180 Hb_000494_050--Hb_000123_180 Hb_012055_040 Hb_012055_040 Hb_000494_050--Hb_012055_040 Hb_005215_010 Hb_005215_010 Hb_000494_050--Hb_005215_010 Hb_011819_020 Hb_011819_020 Hb_000494_050--Hb_011819_020 Hb_000317_100 Hb_000317_100 Hb_000494_050--Hb_000317_100 Hb_012518_070 Hb_012518_070 Hb_000494_050--Hb_012518_070 Hb_000723_220 Hb_000723_220 Hb_001195_470--Hb_000723_220 Hb_004019_120 Hb_004019_120 Hb_001195_470--Hb_004019_120 Hb_000680_110 Hb_000680_110 Hb_001195_470--Hb_000680_110 Hb_001195_470--Hb_001821_150 Hb_004531_120 Hb_004531_120 Hb_001195_470--Hb_004531_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.92505 10.8412 6.30743 14.7247 8.59534 9.22643
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.11282 2.6838 6.8742 9.86742 12.3835

CAGE analysis