Hb_003417_020

Information

Type -
Description -
Location Contig3417: 24499-30734
Sequence    

Annotation

kegg
ID pop:POPTR_0017s10450g
description POPTRDRAFT_825501; ribosomal protein L13
nr
ID XP_012070874.1
description PREDICTED: 50S ribosomal protein L13, chloroplastic [Jatropha curcas]
swissprot
ID C1A3Z5
description 50S ribosomal protein L13 OS=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) GN=rplM PE=3 SV=1
trembl
ID A0A067LP92
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10159 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 50s ribosomal protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35708: 24509-30767
cDNA
(Sanger)
(ID:Location)		 038_H16.ab1: 24777-30768

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003417_020 0.0 - - PREDICTED: 50S ribosomal protein L13, chloroplastic [Jatropha curcas]
2 Hb_003126_050 0.0429139504 - - PREDICTED: cell cycle checkpoint protein RAD17 isoform X1 [Jatropha curcas]
3 Hb_001305_010 0.0551997177 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplastic [Jatropha curcas]
4 Hb_007691_030 0.0588705568 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]
5 Hb_003175_010 0.0593850656 - - PREDICTED: 39S ribosomal protein L4, mitochondrial [Jatropha curcas]
6 Hb_019280_040 0.0597783968 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_007951_060 0.0627664048 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
8 Hb_096563_010 0.0645626226 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Prunus mume]
9 Hb_000085_160 0.0656349797 - - hypothetical protein CICLE_v10009012mg [Citrus clementina]
10 Hb_000010_330 0.0673620633 - - PREDICTED: probable Ufm1-specific protease [Jatropha curcas]
11 Hb_000451_010 0.0679971349 - - secretory carrier membrane protein, putative [Ricinus communis]
12 Hb_003092_040 0.0680314086 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 isoform X2 [Pyrus x bretschneideri]
13 Hb_000327_120 0.0692517027 - - FGFR1 oncogene partner, putative [Ricinus communis]
14 Hb_007317_110 0.069551646 - - PREDICTED: uncharacterized RNA-binding protein C660.15-like [Jatropha curcas]
15 Hb_000757_060 0.0698560509 - - hypothetical protein PRUPE_ppa001141mg [Prunus persica]
16 Hb_006185_050 0.0704801763 - - hypothetical protein POPTR_0001s20590g [Populus trichocarpa]
17 Hb_000640_240 0.0711046774 - - carboxypeptidase regulatory region-containingprotein, putative [Ricinus communis]
18 Hb_000580_180 0.0714162075 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003665_060 0.071854765 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]
20 Hb_011344_210 0.0723159425 - - PREDICTED: probable calcium-binding protein CML13 [Jatropha curcas]

Gene co-expression network

sample Hb_003417_020 Hb_003417_020 Hb_003126_050 Hb_003126_050 Hb_003417_020--Hb_003126_050 Hb_001305_010 Hb_001305_010 Hb_003417_020--Hb_001305_010 Hb_007691_030 Hb_007691_030 Hb_003417_020--Hb_007691_030 Hb_003175_010 Hb_003175_010 Hb_003417_020--Hb_003175_010 Hb_019280_040 Hb_019280_040 Hb_003417_020--Hb_019280_040 Hb_007951_060 Hb_007951_060 Hb_003417_020--Hb_007951_060 Hb_000640_240 Hb_000640_240 Hb_003126_050--Hb_000640_240 Hb_003092_040 Hb_003092_040 Hb_003126_050--Hb_003092_040 Hb_000041_270 Hb_000041_270 Hb_003126_050--Hb_000041_270 Hb_096563_010 Hb_096563_010 Hb_003126_050--Hb_096563_010 Hb_003126_050--Hb_007691_030 Hb_001305_010--Hb_007951_060 Hb_006185_050 Hb_006185_050 Hb_001305_010--Hb_006185_050 Hb_002530_030 Hb_002530_030 Hb_001305_010--Hb_002530_030 Hb_000327_120 Hb_000327_120 Hb_001305_010--Hb_000327_120 Hb_000853_430 Hb_000853_430 Hb_001305_010--Hb_000853_430 Hb_003428_030 Hb_003428_030 Hb_007691_030--Hb_003428_030 Hb_005144_160 Hb_005144_160 Hb_007691_030--Hb_005144_160 Hb_002739_100 Hb_002739_100 Hb_007691_030--Hb_002739_100 Hb_000876_070 Hb_000876_070 Hb_007691_030--Hb_000876_070 Hb_007691_030--Hb_003092_040 Hb_000580_180 Hb_000580_180 Hb_007691_030--Hb_000580_180 Hb_000808_270 Hb_000808_270 Hb_003175_010--Hb_000808_270 Hb_000926_280 Hb_000926_280 Hb_003175_010--Hb_000926_280 Hb_003175_010--Hb_019280_040 Hb_000030_300 Hb_000030_300 Hb_003175_010--Hb_000030_300 Hb_003766_040 Hb_003766_040 Hb_003175_010--Hb_003766_040 Hb_048937_040 Hb_048937_040 Hb_003175_010--Hb_048937_040 Hb_000010_330 Hb_000010_330 Hb_019280_040--Hb_000010_330 Hb_010457_030 Hb_010457_030 Hb_019280_040--Hb_010457_030 Hb_002835_080 Hb_002835_080 Hb_019280_040--Hb_002835_080 Hb_002200_080 Hb_002200_080 Hb_019280_040--Hb_002200_080 Hb_007951_060--Hb_000327_120 Hb_007951_060--Hb_000926_280 Hb_001439_150 Hb_001439_150 Hb_007951_060--Hb_001439_150 Hb_007576_040 Hb_007576_040 Hb_007951_060--Hb_007576_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.4266 12.6071 15.0202 17.4185 26.674 25.4273
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.5371 29.3048 23.9816 16.8587 9.92553

CAGE analysis