Hb_003427_020

Information

Type -
Description -
Location Contig3427: 40067-53783
Sequence    

Annotation

kegg
ID cit:102620852
description probable LRR receptor-like serine/threonine-protein kinase At1g53430-like
nr
ID XP_012080880.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X1 [Jatropha curcas]
swissprot
ID C0LGG8
description Probable LRR receptor-like serine/threonine-protein kinase At1g53430 OS=Arabidopsis thaliana GN=At1g53430 PE=1 SV=1
trembl
ID A0A067KFH5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16252 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35773: 40094-51151 , PASA_asmbl_35774: 47938-48340
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003427_020 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X1 [Jatropha curcas]
2 Hb_001221_050 0.0721260208 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 [Jatropha curcas]
3 Hb_021576_160 0.0741345015 transcription factor TF Family: WRKY putative WRKY transcription factor family protein [Populus trichocarpa]
4 Hb_001022_070 0.0839792806 - - cell wall invertase [Manihot esculenta]
5 Hb_002804_070 0.0893699892 - - hypothetical protein JCGZ_05701 [Jatropha curcas]
6 Hb_000000_320 0.0934672709 - - PREDICTED: calcium uniporter protein 4, mitochondrial [Jatropha curcas]
7 Hb_005946_200 0.0954249205 - - hypothetical protein POPTR_0006s16210g [Populus trichocarpa]
8 Hb_001333_030 0.0982515293 - - Abscisic acid 8'-hydroxylase 1 [Theobroma cacao]
9 Hb_006153_020 0.1087632767 - - vacuolar invertase [Manihot esculenta]
10 Hb_001953_010 0.1093869163 - - PREDICTED: bidirectional sugar transporter SWEET10-like [Jatropha curcas]
11 Hb_002626_060 0.1148010427 - - hypothetical protein JCGZ_27059 [Jatropha curcas]
12 Hb_153180_010 0.1164665344 - - NBS-LRR disease resistance protein NBS49 [Dimocarpus longan]
13 Hb_000020_210 0.118013928 - - hypothetical protein JCGZ_17348 [Jatropha curcas]
14 Hb_124677_090 0.1181303581 - - conserved hypothetical protein [Ricinus communis]
15 Hb_009222_040 0.1191020131 transcription factor TF Family: C2C2-Dof DNA binding with one finger 2.4, putative [Theobroma cacao]
16 Hb_004374_170 0.1213693494 - - PREDICTED: gibberellin 20 oxidase 1-B [Jatropha curcas]
17 Hb_077694_020 0.1245802301 - - SAUR family protein [Theobroma cacao]
18 Hb_029622_090 0.1263613301 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 2-like [Jatropha curcas]
19 Hb_051408_010 0.126364705 - - calcineurin-like phosphoesterase [Manihot esculenta]
20 Hb_005111_020 0.1264001594 - - hypothetical protein CISIN_1g0417821mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_003427_020 Hb_003427_020 Hb_001221_050 Hb_001221_050 Hb_003427_020--Hb_001221_050 Hb_021576_160 Hb_021576_160 Hb_003427_020--Hb_021576_160 Hb_001022_070 Hb_001022_070 Hb_003427_020--Hb_001022_070 Hb_002804_070 Hb_002804_070 Hb_003427_020--Hb_002804_070 Hb_000000_320 Hb_000000_320 Hb_003427_020--Hb_000000_320 Hb_005946_200 Hb_005946_200 Hb_003427_020--Hb_005946_200 Hb_001221_050--Hb_005946_200 Hb_001221_050--Hb_021576_160 Hb_006153_020 Hb_006153_020 Hb_001221_050--Hb_006153_020 Hb_001221_050--Hb_002804_070 Hb_001333_030 Hb_001333_030 Hb_001221_050--Hb_001333_030 Hb_021576_160--Hb_006153_020 Hb_021576_160--Hb_001333_030 Hb_021576_160--Hb_005946_200 Hb_029622_090 Hb_029622_090 Hb_021576_160--Hb_029622_090 Hb_001022_070--Hb_000000_320 Hb_001953_010 Hb_001953_010 Hb_001022_070--Hb_001953_010 Hb_004474_070 Hb_004474_070 Hb_001022_070--Hb_004474_070 Hb_002303_050 Hb_002303_050 Hb_001022_070--Hb_002303_050 Hb_001022_070--Hb_005946_200 Hb_002804_070--Hb_001953_010 Hb_004374_170 Hb_004374_170 Hb_002804_070--Hb_004374_170 Hb_002804_070--Hb_005946_200 Hb_000120_600 Hb_000120_600 Hb_002804_070--Hb_000120_600 Hb_002804_070--Hb_002303_050 Hb_002804_070--Hb_004474_070 Hb_000000_320--Hb_001953_010 Hb_004112_070 Hb_004112_070 Hb_000000_320--Hb_004112_070 Hb_005111_020 Hb_005111_020 Hb_000000_320--Hb_005111_020 Hb_000000_320--Hb_004474_070 Hb_005946_200--Hb_002303_050 Hb_005946_200--Hb_006153_020 Hb_002811_320 Hb_002811_320 Hb_005946_200--Hb_002811_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0583613 13.7928 15.3553 26.9528 0.0653422 0.061363
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0122916 0 0.785234 5.10718

CAGE analysis