Hb_003427_070

Information

Type -
Description -
Location Contig3427: 80438-80942
Sequence    

Annotation

kegg
ID pop:POPTR_0067s00310g
description hypothetical protein
nr
ID XP_006388970.1
description hypothetical protein POPTR_0067s00310g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U7E078
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0067s00310g PE=4 SV=1
Gene Ontology
ID GO:0000166
description probable lrr receptor-like serine threonine-protein kinase at1g53430

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003427_070 0.0 - - hypothetical protein POPTR_0067s00310g [Populus trichocarpa]
2 Hb_084304_010 0.0555463389 - - PREDICTED: probable auxin efflux carrier component 1c isoform X2 [Jatropha curcas]
3 Hb_000739_190 0.078597033 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
4 Hb_000922_050 0.0852875462 - - PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
5 Hb_003777_150 0.0896033856 - - PREDICTED: uncharacterized protein LOC105640938 isoform X1 [Jatropha curcas]
6 Hb_000684_110 0.0961687636 - - hypothetical protein POPTR_0006s13250g [Populus trichocarpa]
7 Hb_039075_010 0.0963997746 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
8 Hb_006351_050 0.1069517252 - - PREDICTED: uncharacterized protein LOC105133646 [Populus euphratica]
9 Hb_030360_010 0.1070015442 - - -
10 Hb_000085_410 0.1099061476 - - hypothetical protein POPTR_0011s09040g [Populus trichocarpa]
11 Hb_001417_090 0.1126555189 - - PREDICTED: uncharacterized protein LOC105650625 [Jatropha curcas]
12 Hb_000497_080 0.1129369543 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000614_120 0.1130803803 - - hypothetical protein JCGZ_17923 [Jatropha curcas]
14 Hb_002260_140 0.1151484686 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000175_370 0.1159000772 - - hypothetical protein EUGRSUZ_F03862 [Eucalyptus grandis]
16 Hb_016911_010 0.116110729 - - hypothetical protein POPTR_0010s15010g [Populus trichocarpa]
17 Hb_009079_020 0.1173143586 - - PREDICTED: protein WALLS ARE THIN 1 [Jatropha curcas]
18 Hb_001110_060 0.1181264158 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
19 Hb_000139_390 0.1185452512 - - -
20 Hb_000120_560 0.1199342593 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_003427_070 Hb_003427_070 Hb_084304_010 Hb_084304_010 Hb_003427_070--Hb_084304_010 Hb_000739_190 Hb_000739_190 Hb_003427_070--Hb_000739_190 Hb_000922_050 Hb_000922_050 Hb_003427_070--Hb_000922_050 Hb_003777_150 Hb_003777_150 Hb_003427_070--Hb_003777_150 Hb_000684_110 Hb_000684_110 Hb_003427_070--Hb_000684_110 Hb_039075_010 Hb_039075_010 Hb_003427_070--Hb_039075_010 Hb_084304_010--Hb_003777_150 Hb_006351_050 Hb_006351_050 Hb_084304_010--Hb_006351_050 Hb_000188_140 Hb_000188_140 Hb_084304_010--Hb_000188_140 Hb_001500_020 Hb_001500_020 Hb_084304_010--Hb_001500_020 Hb_084304_010--Hb_000739_190 Hb_030360_010 Hb_030360_010 Hb_000739_190--Hb_030360_010 Hb_000739_190--Hb_000684_110 Hb_000739_190--Hb_039075_010 Hb_000310_040 Hb_000310_040 Hb_000739_190--Hb_000310_040 Hb_001110_060 Hb_001110_060 Hb_000739_190--Hb_001110_060 Hb_000085_410 Hb_000085_410 Hb_000922_050--Hb_000085_410 Hb_000922_050--Hb_001110_060 Hb_000922_050--Hb_000684_110 Hb_003175_120 Hb_003175_120 Hb_000922_050--Hb_003175_120 Hb_025194_070 Hb_025194_070 Hb_000922_050--Hb_025194_070 Hb_000628_060 Hb_000628_060 Hb_003777_150--Hb_000628_060 Hb_004474_020 Hb_004474_020 Hb_003777_150--Hb_004474_020 Hb_004970_100 Hb_004970_100 Hb_003777_150--Hb_004970_100 Hb_069384_010 Hb_069384_010 Hb_003777_150--Hb_069384_010 Hb_084812_010 Hb_084812_010 Hb_000684_110--Hb_084812_010 Hb_004112_070 Hb_004112_070 Hb_000684_110--Hb_004112_070 Hb_000684_110--Hb_001110_060 Hb_000139_390 Hb_000139_390 Hb_000684_110--Hb_000139_390 Hb_039075_010--Hb_030360_010 Hb_039075_010--Hb_000310_040 Hb_016911_010 Hb_016911_010 Hb_039075_010--Hb_016911_010 Hb_004112_080 Hb_004112_080 Hb_039075_010--Hb_004112_080 Hb_000333_140 Hb_000333_140 Hb_039075_010--Hb_000333_140 Hb_011628_010 Hb_011628_010 Hb_039075_010--Hb_011628_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.327317 14.2638 25.79 97.6079 0.0853206 0.289463
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.214701 0 0 1.23839 8.77402

CAGE analysis