Hb_003428_070

Information

Type -
Description -
Location Contig3428: 51032-59103
Sequence    

Annotation

kegg
ID pop:POPTR_0001s35150g
description POPTRDRAFT_1068852; hypothetical protein
nr
ID KHG01046.1
description DEAD-box ATP-dependent RNA helicase 46 -like protein [Gossypium arboreum]
swissprot
ID P46942
description ATP-dependent RNA helicase-like protein DB10 OS=Nicotiana sylvestris PE=2 SV=1
trembl
ID A0A0B0MQ20
description DEAD-box ATP-dependent RNA helicase 46-like protein OS=Gossypium arboreum GN=F383_21324 PE=3 SV=1
Gene Ontology
ID GO:0005634
description dead-box atp-dependent rna helicase 46

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35792: 51146-59924 , PASA_asmbl_35793: 51146-59924 , PASA_asmbl_35794: 52411-52847 , PASA_asmbl_35795: 55655-55896
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003428_070 0.0 - - DEAD-box ATP-dependent RNA helicase 46 -like protein [Gossypium arboreum]
2 Hb_000567_050 0.0506765392 - - PREDICTED: UBP1-associated protein 2C [Jatropha curcas]
3 Hb_016898_010 0.0566340617 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
4 Hb_000101_240 0.057551245 desease resistance Gene Name: NB-ARC putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
5 Hb_000743_040 0.0576086988 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
6 Hb_000820_170 0.0633145414 - - PREDICTED: THO complex subunit 4A [Jatropha curcas]
7 Hb_000173_510 0.063853611 - - PREDICTED: AP-5 complex subunit mu [Jatropha curcas]
8 Hb_006252_040 0.0639195615 - - queuine tRNA-ribosyltransferase, putative [Ricinus communis]
9 Hb_003362_070 0.0641175678 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
10 Hb_000283_070 0.0648428592 - - PREDICTED: T-complex protein 1 subunit delta [Jatropha curcas]
11 Hb_000600_070 0.0653193063 - - PREDICTED: leucine aminopeptidase 1-like [Jatropha curcas]
12 Hb_005914_060 0.0654141985 - - PREDICTED: splicing factor U2af large subunit A [Jatropha curcas]
13 Hb_003935_030 0.0665584205 - - PREDICTED: 14-3-3-like protein GF14 kappa isoform X2 [Jatropha curcas]
14 Hb_009411_010 0.0669259934 - - PREDICTED: uncharacterized protein LOC105645272 [Jatropha curcas]
15 Hb_005494_020 0.0672087249 - - PREDICTED: transmembrane protein 184 homolog DDB_G0279555 [Jatropha curcas]
16 Hb_004619_050 0.0692630077 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 8-like isoform X2 [Jatropha curcas]
17 Hb_002027_270 0.0693611069 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]
18 Hb_003966_030 0.0694511725 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like isoform X7 [Jatropha curcas]
19 Hb_000347_130 0.069653686 - - PREDICTED: nuclear pore complex protein NUP107 [Jatropha curcas]
20 Hb_000084_120 0.0698223817 - - PREDICTED: pentatricopeptide repeat-containing protein At2g36240 [Jatropha curcas]

Gene co-expression network

sample Hb_003428_070 Hb_003428_070 Hb_000567_050 Hb_000567_050 Hb_003428_070--Hb_000567_050 Hb_016898_010 Hb_016898_010 Hb_003428_070--Hb_016898_010 Hb_000101_240 Hb_000101_240 Hb_003428_070--Hb_000101_240 Hb_000743_040 Hb_000743_040 Hb_003428_070--Hb_000743_040 Hb_000820_170 Hb_000820_170 Hb_003428_070--Hb_000820_170 Hb_000173_510 Hb_000173_510 Hb_003428_070--Hb_000173_510 Hb_000023_190 Hb_000023_190 Hb_000567_050--Hb_000023_190 Hb_000567_050--Hb_000743_040 Hb_000600_070 Hb_000600_070 Hb_000567_050--Hb_000600_070 Hb_002044_060 Hb_002044_060 Hb_000567_050--Hb_002044_060 Hb_010381_060 Hb_010381_060 Hb_000567_050--Hb_010381_060 Hb_003362_070 Hb_003362_070 Hb_016898_010--Hb_003362_070 Hb_000084_120 Hb_000084_120 Hb_016898_010--Hb_000084_120 Hb_016898_010--Hb_000101_240 Hb_048476_180 Hb_048476_180 Hb_016898_010--Hb_048476_180 Hb_003952_150 Hb_003952_150 Hb_016898_010--Hb_003952_150 Hb_009411_010 Hb_009411_010 Hb_000101_240--Hb_009411_010 Hb_000101_240--Hb_000084_120 Hb_000101_240--Hb_048476_180 Hb_000101_240--Hb_003362_070 Hb_000329_090 Hb_000329_090 Hb_000743_040--Hb_000329_090 Hb_000743_040--Hb_000600_070 Hb_000072_350 Hb_000072_350 Hb_000743_040--Hb_000072_350 Hb_000743_040--Hb_010381_060 Hb_006252_040 Hb_006252_040 Hb_000820_170--Hb_006252_040 Hb_000820_170--Hb_016898_010 Hb_005731_030 Hb_005731_030 Hb_000820_170--Hb_005731_030 Hb_000820_170--Hb_000101_240 Hb_123352_020 Hb_123352_020 Hb_000820_170--Hb_123352_020 Hb_000567_010 Hb_000567_010 Hb_000173_510--Hb_000567_010 Hb_000768_110 Hb_000768_110 Hb_000173_510--Hb_000768_110 Hb_000160_040 Hb_000160_040 Hb_000173_510--Hb_000160_040 Hb_000283_070 Hb_000283_070 Hb_000173_510--Hb_000283_070 Hb_000059_150 Hb_000059_150 Hb_000173_510--Hb_000059_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.6093 24.9559 11.188 13.9644 33.7152 50.9954
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.5731 16.7941 18.8124 21.0025 16.1454

CAGE analysis