Hb_003428_110

Information

Type -
Description -
Location Contig3428: 126070-127286
Sequence    

Annotation

kegg
ID atr:s00939p00005100
description AMTR_s00939p00005100; hypothetical protein
nr
ID KHG17087.1
description ARF2-B: ADP-ribosylation factor 2-B [Gossypium arboreum]
swissprot
ID O48920
description ADP-ribosylation factor OS=Vigna unguiculata GN=ARF PE=2 SV=3
trembl
ID A0A0B0NWQ3
description ARF2-B: ADP-ribosylation factor 2-B OS=Gossypium arboreum GN=F383_20717 PE=4 SV=1
Gene Ontology
ID GO:0005622
description adp-ribosylation factor

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35802: 120192-127370 , PASA_asmbl_35803: 120172-127367
cDNA
(Sanger)
(ID:Location)		 012_B07.ab1: 120202-127049 , 017_D15.ab1: 120202-126934 , 017_M23.ab1: 120202-127012 , 018_K22.ab1: 120172-126935 , 026_L16.ab1: 120192-126720 , 030_O22.ab1: 120197-126975 , 031_N16.ab1: 120198-127050 , 032_H19.ab1: 120196-126990 , 034_E13.ab1: 120194-126934 , 035_N05.ab1: 120197-127005 , 037_F15.ab1: 126691-127128 , 039_M16.ab1: 120202-126954 , 040_P13.ab1: 120202-127028 , 044_E18.ab1: 120196-126975 , 045_K05.ab1: 120196-127014 , 046_K18.ab1: 120192-126947 , 048_G05.ab1: 120192-126983 , 053_M22.ab1: 120198-127023

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003428_110 0.0 - - ARF2-B: ADP-ribosylation factor 2-B [Gossypium arboreum]
2 Hb_017434_090 0.0953049754 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001141_080 0.1017528972 - - PREDICTED: protein RDM1 [Jatropha curcas]
4 Hb_000567_200 0.1023449854 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Jatropha curcas]
5 Hb_001518_020 0.1040403746 - - PREDICTED: F-box/LRR-repeat protein 13-like isoform X2 [Fragaria vesca subsp. vesca]
6 Hb_009382_020 0.1106681879 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
7 Hb_003747_240 0.1115545591 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
8 Hb_000138_040 0.1133058471 - - PREDICTED: uncharacterized protein LOC105646531 [Jatropha curcas]
9 Hb_000163_290 0.1134822041 - - PREDICTED: nucleolar protein 16 [Jatropha curcas]
10 Hb_000784_090 0.1135999318 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Jatropha curcas]
11 Hb_006816_360 0.1162611087 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 3 [Jatropha curcas]
12 Hb_002660_140 0.1169943391 - - hypothetical protein POPTR_0006s13060g [Populus trichocarpa]
13 Hb_031089_010 0.1177567222 - - DNA binding protein, putative [Ricinus communis]
14 Hb_005754_020 0.1185178462 - - PREDICTED: mitogen-activated protein kinase homolog NTF4 [Jatropha curcas]
15 Hb_000258_430 0.1199188385 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
16 Hb_002249_140 0.120491979 - - PREDICTED: uncharacterized protein LOC105648715 [Jatropha curcas]
17 Hb_000176_140 0.120640648 - - PREDICTED: bystin [Jatropha curcas]
18 Hb_002119_060 0.1246581002 transcription factor TF Family: Orphans histidine kinase 1, 2, 3 plant, putative [Ricinus communis]
19 Hb_000282_060 0.1252703615 - - PREDICTED: uncharacterized protein LOC105638155 [Jatropha curcas]
20 Hb_127979_010 0.1262503959 - - PREDICTED: uncharacterized protein LOC105629383 [Jatropha curcas]

Gene co-expression network

sample Hb_003428_110 Hb_003428_110 Hb_017434_090 Hb_017434_090 Hb_003428_110--Hb_017434_090 Hb_001141_080 Hb_001141_080 Hb_003428_110--Hb_001141_080 Hb_000567_200 Hb_000567_200 Hb_003428_110--Hb_000567_200 Hb_001518_020 Hb_001518_020 Hb_003428_110--Hb_001518_020 Hb_009382_020 Hb_009382_020 Hb_003428_110--Hb_009382_020 Hb_003747_240 Hb_003747_240 Hb_003428_110--Hb_003747_240 Hb_000282_060 Hb_000282_060 Hb_017434_090--Hb_000282_060 Hb_002660_140 Hb_002660_140 Hb_017434_090--Hb_002660_140 Hb_000732_260 Hb_000732_260 Hb_017434_090--Hb_000732_260 Hb_005754_020 Hb_005754_020 Hb_017434_090--Hb_005754_020 Hb_004032_440 Hb_004032_440 Hb_017434_090--Hb_004032_440 Hb_005147_110 Hb_005147_110 Hb_001141_080--Hb_005147_110 Hb_002249_140 Hb_002249_140 Hb_001141_080--Hb_002249_140 Hb_001141_080--Hb_009382_020 Hb_004310_060 Hb_004310_060 Hb_001141_080--Hb_004310_060 Hb_008725_250 Hb_008725_250 Hb_001141_080--Hb_008725_250 Hb_000163_290 Hb_000163_290 Hb_000567_200--Hb_000163_290 Hb_002924_050 Hb_002924_050 Hb_000567_200--Hb_002924_050 Hb_006499_010 Hb_006499_010 Hb_000567_200--Hb_006499_010 Hb_001930_070 Hb_001930_070 Hb_000567_200--Hb_001930_070 Hb_000567_200--Hb_001518_020 Hb_000856_340 Hb_000856_340 Hb_001518_020--Hb_000856_340 Hb_000809_040 Hb_000809_040 Hb_001518_020--Hb_000809_040 Hb_001518_020--Hb_000163_290 Hb_000300_620 Hb_000300_620 Hb_001518_020--Hb_000300_620 Hb_031089_010 Hb_031089_010 Hb_001518_020--Hb_031089_010 Hb_001518_020--Hb_009382_020 Hb_009382_020--Hb_000300_620 Hb_000138_040 Hb_000138_040 Hb_009382_020--Hb_000138_040 Hb_000483_350 Hb_000483_350 Hb_009382_020--Hb_000483_350 Hb_001157_030 Hb_001157_030 Hb_009382_020--Hb_001157_030 Hb_005062_070 Hb_005062_070 Hb_009382_020--Hb_005062_070 Hb_002890_280 Hb_002890_280 Hb_009382_020--Hb_002890_280 Hb_003747_240--Hb_000809_040 Hb_003747_240--Hb_000163_290 Hb_011174_070 Hb_011174_070 Hb_003747_240--Hb_011174_070 Hb_003747_240--Hb_006499_010 Hb_003747_240--Hb_000138_040 Hb_003404_030 Hb_003404_030 Hb_003747_240--Hb_003404_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6061.37 1390.74 89.7485 766.02 3474.01 3561.59
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3734.89 1962.7 3226.37 1028.99 97.0506

CAGE analysis