Hb_003430_040

Information

Type -
Description -
Location Contig3430: 31070-35231
Sequence    

Annotation

kegg
ID rcu:RCOM_0285840
description spermidine synthase 1, putative (EC:2.1.1.53)
nr
ID XP_002534321.1
description spermidine synthase 1, putative [Ricinus communis]
swissprot
ID O82147
description Spermidine synthase OS=Coffea arabica PE=2 SV=1
trembl
ID B9T7V2
description Spermidine synthase 1, putative OS=Ricinus communis GN=RCOM_0285840 PE=3 SV=1
Gene Ontology
ID GO:0004766
description spermidine synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35865: 31309-35408
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003430_040 0.0 - - spermidine synthase 1, putative [Ricinus communis]
2 Hb_074792_010 0.0807640732 - - PREDICTED: probable lactoylglutathione lyase, chloroplast [Gossypium raimondii]
3 Hb_000347_140 0.0964183502 - - PREDICTED: protein FLUORESCENT IN BLUE LIGHT, chloroplastic isoform X2 [Jatropha curcas]
4 Hb_003874_010 0.1045007224 transcription factor TF Family: B3 transcription factor, putative [Ricinus communis]
5 Hb_000732_030 0.1102173187 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000032_200 0.1192850621 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
7 Hb_000300_710 0.1227639891 - - PREDICTED: uncharacterized protein LOC105123549 [Populus euphratica]
8 Hb_004957_020 0.1233110798 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003938_170 0.1383298082 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like [Jatropha curcas]
10 Hb_001214_190 0.1422392664 - - hypothetical protein JCGZ_25001 [Jatropha curcas]
11 Hb_000959_190 0.1426210147 - - PREDICTED: crossover junction endonuclease EME1B-like [Jatropha curcas]
12 Hb_003549_130 0.1459136629 - - neutral/alkaline invertase [Manihot esculenta]
13 Hb_004517_030 0.1459433128 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000345_290 0.1485441992 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_000392_450 0.1486020085 - - PREDICTED: isochorismate synthase 2, chloroplastic [Jatropha curcas]
16 Hb_000638_260 0.1518406606 - - hypothetical protein JCGZ_06730 [Jatropha curcas]
17 Hb_000816_210 0.1559096295 - - PREDICTED: uroporphyrinogen decarboxylase isoform X2 [Jatropha curcas]
18 Hb_003106_200 0.1569556621 - - PREDICTED: uncharacterized protein LOC105640430 isoform X1 [Jatropha curcas]
19 Hb_004449_140 0.1582186578 transcription factor TF Family: MYB PREDICTED: transcription factor GAMYB-like [Jatropha curcas]
20 Hb_007123_080 0.1594675102 - - big map kinase/bmk, putative [Ricinus communis]

Gene co-expression network

sample Hb_003430_040 Hb_003430_040 Hb_074792_010 Hb_074792_010 Hb_003430_040--Hb_074792_010 Hb_000347_140 Hb_000347_140 Hb_003430_040--Hb_000347_140 Hb_003874_010 Hb_003874_010 Hb_003430_040--Hb_003874_010 Hb_000732_030 Hb_000732_030 Hb_003430_040--Hb_000732_030 Hb_000032_200 Hb_000032_200 Hb_003430_040--Hb_000032_200 Hb_000300_710 Hb_000300_710 Hb_003430_040--Hb_000300_710 Hb_074792_010--Hb_000300_710 Hb_074792_010--Hb_000347_140 Hb_074792_010--Hb_000732_030 Hb_000638_260 Hb_000638_260 Hb_074792_010--Hb_000638_260 Hb_074792_010--Hb_003874_010 Hb_000347_140--Hb_000300_710 Hb_188739_010 Hb_188739_010 Hb_000347_140--Hb_188739_010 Hb_000347_140--Hb_000032_200 Hb_000347_140--Hb_000638_260 Hb_000392_450 Hb_000392_450 Hb_003874_010--Hb_000392_450 Hb_002027_320 Hb_002027_320 Hb_003874_010--Hb_002027_320 Hb_007263_010 Hb_007263_010 Hb_003874_010--Hb_007263_010 Hb_004517_030 Hb_004517_030 Hb_003874_010--Hb_004517_030 Hb_003874_010--Hb_000300_710 Hb_000959_190 Hb_000959_190 Hb_000732_030--Hb_000959_190 Hb_003529_180 Hb_003529_180 Hb_000732_030--Hb_003529_180 Hb_001135_110 Hb_001135_110 Hb_000732_030--Hb_001135_110 Hb_000732_030--Hb_000032_200 Hb_001141_050 Hb_001141_050 Hb_000032_200--Hb_001141_050 Hb_003106_200 Hb_003106_200 Hb_000032_200--Hb_003106_200 Hb_012787_030 Hb_012787_030 Hb_000032_200--Hb_012787_030 Hb_000300_710--Hb_188739_010 Hb_000424_070 Hb_000424_070 Hb_000300_710--Hb_000424_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.3174 31.0963 205.062 33.7762 15.0187 18.7645
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.0677 11.0027 12.6833 13.8476 26.8781

CAGE analysis