Hb_003430_060

Information

Type -
Description -
Location Contig3430: 44596-61138
Sequence    

Annotation

kegg
ID rcu:RCOM_0285890
description Potassium transporter, putative
nr
ID XP_010928598.1
description PREDICTED: potassium transporter 23 isoform X2 [Elaeis guineensis]
swissprot
ID O80739
description Putative potassium transporter 12 OS=Arabidopsis thaliana GN=POT12 PE=1 SV=2
trembl
ID B9T7V7
description Potassium transporter OS=Ricinus communis GN=RCOM_0285890 PE=3 SV=1
Gene Ontology
ID GO:0009507
description potassium transporter 12 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35869: 45399-61006 , PASA_asmbl_35870: 54508-54665
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003430_060 0.0 - - PREDICTED: potassium transporter 23 isoform X2 [Elaeis guineensis]
2 Hb_007508_080 0.0962683877 - - PREDICTED: presenilin-like protein At2g29900 [Jatropha curcas]
3 Hb_005321_020 0.0983730063 - - splicing factor-related family protein [Populus trichocarpa]
4 Hb_000574_100 0.1021180315 - - DEAD-box protein abstrakt [Populus trichocarpa]
5 Hb_002111_070 0.1030470915 - - PREDICTED: protein S-acyltransferase 24 [Jatropha curcas]
6 Hb_010697_040 0.1064148618 - - PREDICTED: protein GPR107 isoform X1 [Jatropha curcas]
7 Hb_000563_640 0.1068122741 - - PREDICTED: chaperone protein dnaJ 49 [Jatropha curcas]
8 Hb_001674_030 0.1087963725 - - PREDICTED: BTB/POZ domain-containing protein At2g24240 [Jatropha curcas]
9 Hb_001135_130 0.1110689252 - - hypothetical protein CISIN_1g0171752mg, partial [Citrus sinensis]
10 Hb_009620_050 0.1115181632 - - PREDICTED: protein unc-45 homolog A [Jatropha curcas]
11 Hb_000922_370 0.1123234435 - - PREDICTED: uncharacterized protein LOC105640366 [Jatropha curcas]
12 Hb_003078_020 0.1129651251 - - PREDICTED: U-box domain-containing protein 9 [Jatropha curcas]
13 Hb_002454_020 0.1136529165 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 9 [Vitis vinifera]
14 Hb_000347_180 0.1150484076 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
15 Hb_000080_150 0.115311118 - - PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X2 [Jatropha curcas]
16 Hb_002111_060 0.1158079141 - - PREDICTED: toll-like receptor 13 [Jatropha curcas]
17 Hb_001269_210 0.115870816 - - PREDICTED: pentatricopeptide repeat-containing protein At1g76280 isoform X1 [Jatropha curcas]
18 Hb_000525_010 0.1164647545 - - ring finger protein, putative [Ricinus communis]
19 Hb_005000_320 0.1170120082 - - PREDICTED: casein kinase I isoform delta-like [Jatropha curcas]
20 Hb_000011_190 0.1177852809 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 6 [Jatropha curcas]

Gene co-expression network

sample Hb_003430_060 Hb_003430_060 Hb_007508_080 Hb_007508_080 Hb_003430_060--Hb_007508_080 Hb_005321_020 Hb_005321_020 Hb_003430_060--Hb_005321_020 Hb_000574_100 Hb_000574_100 Hb_003430_060--Hb_000574_100 Hb_002111_070 Hb_002111_070 Hb_003430_060--Hb_002111_070 Hb_010697_040 Hb_010697_040 Hb_003430_060--Hb_010697_040 Hb_000563_640 Hb_000563_640 Hb_003430_060--Hb_000563_640 Hb_004668_060 Hb_004668_060 Hb_007508_080--Hb_004668_060 Hb_008103_020 Hb_008103_020 Hb_007508_080--Hb_008103_020 Hb_000139_130 Hb_000139_130 Hb_007508_080--Hb_000139_130 Hb_001377_160 Hb_001377_160 Hb_007508_080--Hb_001377_160 Hb_004109_230 Hb_004109_230 Hb_007508_080--Hb_004109_230 Hb_005503_040 Hb_005503_040 Hb_007508_080--Hb_005503_040 Hb_006831_110 Hb_006831_110 Hb_005321_020--Hb_006831_110 Hb_005321_020--Hb_000563_640 Hb_000645_120 Hb_000645_120 Hb_005321_020--Hb_000645_120 Hb_003531_060 Hb_003531_060 Hb_005321_020--Hb_003531_060 Hb_000283_070 Hb_000283_070 Hb_005321_020--Hb_000283_070 Hb_009620_050 Hb_009620_050 Hb_005321_020--Hb_009620_050 Hb_002615_090 Hb_002615_090 Hb_000574_100--Hb_002615_090 Hb_000922_370 Hb_000922_370 Hb_000574_100--Hb_000922_370 Hb_001472_090 Hb_001472_090 Hb_000574_100--Hb_001472_090 Hb_000941_130 Hb_000941_130 Hb_000574_100--Hb_000941_130 Hb_000574_070 Hb_000574_070 Hb_000574_100--Hb_000574_070 Hb_000878_180 Hb_000878_180 Hb_000574_100--Hb_000878_180 Hb_000703_150 Hb_000703_150 Hb_002111_070--Hb_000703_150 Hb_000080_150 Hb_000080_150 Hb_002111_070--Hb_000080_150 Hb_002043_140 Hb_002043_140 Hb_002111_070--Hb_002043_140 Hb_009615_170 Hb_009615_170 Hb_002111_070--Hb_009615_170 Hb_002111_070--Hb_000941_130 Hb_000890_210 Hb_000890_210 Hb_002111_070--Hb_000890_210 Hb_010697_040--Hb_000139_130 Hb_008253_020 Hb_008253_020 Hb_010697_040--Hb_008253_020 Hb_010697_040--Hb_007508_080 Hb_001205_110 Hb_001205_110 Hb_010697_040--Hb_001205_110 Hb_000046_070 Hb_000046_070 Hb_010697_040--Hb_000046_070 Hb_010712_090 Hb_010712_090 Hb_010697_040--Hb_010712_090 Hb_000563_640--Hb_009620_050 Hb_000563_640--Hb_002615_090 Hb_000563_640--Hb_006831_110 Hb_000563_640--Hb_000922_370 Hb_074969_010 Hb_074969_010 Hb_000563_640--Hb_074969_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.6153 31.2914 11.8472 35.5359 20.7525 36.4763
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.7528 9.53524 23.3792 16.6759 13.0778

CAGE analysis