Hb_003430_080

Information

Type -
Description -
Location Contig3430: 92407-100928
Sequence    

Annotation

kegg
ID rcu:RCOM_1481410
description zinc finger protein, putative
nr
ID XP_002524216.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q9VD44
description Poly(A) RNA polymerase gld-2 homolog A OS=Drosophila melanogaster GN=Gld2 PE=1 SV=3
trembl
ID B9SDZ7
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_1481410 PE=4 SV=1
Gene Ontology
ID GO:0044424
description poly rna polymerase gld2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35872: 95023-100889 , PASA_asmbl_35873: 95023-100889 , PASA_asmbl_35874: 94999-100921
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003430_080 0.0 - - zinc finger protein, putative [Ricinus communis]
2 Hb_005694_180 0.0855462369 - - PREDICTED: cytochrome b5 [Jatropha curcas]
3 Hb_000003_030 0.0957894033 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_000740_090 0.0977916111 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001195_420 0.0979743722 - - PREDICTED: uncharacterized protein LOC105633774 isoform X4 [Jatropha curcas]
6 Hb_023226_030 0.1010798218 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-14-like [Jatropha curcas]
7 Hb_001009_150 0.1060367569 - - Glyceraldehyde-3-phosphate dehydrogenase [Gossypium arboreum]
8 Hb_000309_030 0.1066309469 - - PREDICTED: formate dehydrogenase, mitochondrial [Jatropha curcas]
9 Hb_034507_060 0.110477443 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic-like [Citrus sinensis]
10 Hb_000940_210 0.1123781277 - - cyclophilin [Hevea brasiliensis]
11 Hb_000134_120 0.1163396468 - - PREDICTED: uncharacterized protein LOC105628669 [Jatropha curcas]
12 Hb_004218_130 0.1169187067 - - PREDICTED: uridine 5'-monophosphate synthase [Jatropha curcas]
13 Hb_001545_130 0.1186680768 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
14 Hb_002641_160 0.1204224384 - - conserved hypothetical protein [Ricinus communis]
15 Hb_010050_020 0.1211521891 - - PREDICTED: uncharacterized protein LOC102601222 [Solanum tuberosum]
16 Hb_172706_020 0.1233449712 - - PREDICTED: protein ABIL2 [Jatropha curcas]
17 Hb_012760_090 0.1262986064 - - Aspartic proteinase-like protein 1 [Morus notabilis]
18 Hb_001053_210 0.1320268978 - - -
19 Hb_011457_130 0.1322388033 - - PREDICTED: serine/threonine-protein kinase Nek2 [Jatropha curcas]
20 Hb_002739_120 0.1326238703 - - PREDICTED: zinc finger protein ZPR1-like [Jatropha curcas]

Gene co-expression network

sample Hb_003430_080 Hb_003430_080 Hb_005694_180 Hb_005694_180 Hb_003430_080--Hb_005694_180 Hb_000003_030 Hb_000003_030 Hb_003430_080--Hb_000003_030 Hb_000740_090 Hb_000740_090 Hb_003430_080--Hb_000740_090 Hb_001195_420 Hb_001195_420 Hb_003430_080--Hb_001195_420 Hb_023226_030 Hb_023226_030 Hb_003430_080--Hb_023226_030 Hb_001009_150 Hb_001009_150 Hb_003430_080--Hb_001009_150 Hb_034507_060 Hb_034507_060 Hb_005694_180--Hb_034507_060 Hb_005694_180--Hb_023226_030 Hb_005694_180--Hb_001195_420 Hb_000309_030 Hb_000309_030 Hb_005694_180--Hb_000309_030 Hb_012760_090 Hb_012760_090 Hb_005694_180--Hb_012760_090 Hb_001545_130 Hb_001545_130 Hb_000003_030--Hb_001545_130 Hb_019654_060 Hb_019654_060 Hb_000003_030--Hb_019654_060 Hb_004032_210 Hb_004032_210 Hb_000003_030--Hb_004032_210 Hb_000581_030 Hb_000581_030 Hb_000003_030--Hb_000581_030 Hb_000000_330 Hb_000000_330 Hb_000003_030--Hb_000000_330 Hb_001053_210 Hb_001053_210 Hb_000740_090--Hb_001053_210 Hb_147245_010 Hb_147245_010 Hb_000740_090--Hb_147245_010 Hb_000740_090--Hb_001545_130 Hb_000940_210 Hb_000940_210 Hb_000740_090--Hb_000940_210 Hb_000740_090--Hb_034507_060 Hb_001195_420--Hb_001009_150 Hb_000363_180 Hb_000363_180 Hb_001195_420--Hb_000363_180 Hb_000012_400 Hb_000012_400 Hb_001195_420--Hb_000012_400 Hb_001221_390 Hb_001221_390 Hb_001195_420--Hb_001221_390 Hb_023226_030--Hb_034507_060 Hb_172706_020 Hb_172706_020 Hb_023226_030--Hb_172706_020 Hb_023226_030--Hb_000309_030 Hb_023226_030--Hb_001195_420 Hb_002739_120 Hb_002739_120 Hb_001009_150--Hb_002739_120 Hb_010407_030 Hb_010407_030 Hb_001009_150--Hb_010407_030 Hb_000318_040 Hb_000318_040 Hb_001009_150--Hb_000318_040 Hb_006949_060 Hb_006949_060 Hb_001009_150--Hb_006949_060 Hb_028077_020 Hb_028077_020 Hb_001009_150--Hb_028077_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.96356 19.8496 34.8156 48.3046 5.91448 6.16628
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.33731 3.1807 2.58221 23.2093 12.4426

CAGE analysis