Hb_003434_060

Information

Type -
Description -
Location Contig3434: 121824-125303
Sequence    

Annotation

kegg
ID rcu:RCOM_0096190
description protease m50 membrane-bound transcription factor site 2 protease, putative (EC:3.4.24.85)
nr
ID XP_012075582.1
description PREDICTED: membrane-bound transcription factor site-2 protease homolog isoform X1 [Jatropha curcas]
swissprot
ID F4JUU5
description Membrane-bound transcription factor site-2 protease homolog OS=Arabidopsis thaliana GN=S2P PE=2 SV=2
trembl
ID A0A067KFA6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09199 PE=4 SV=1
Gene Ontology
ID GO:0016020
description membrane-bound transcription factor site-2 protease

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35882: 124567-125105
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003434_060 0.0 - - PREDICTED: membrane-bound transcription factor site-2 protease homolog isoform X1 [Jatropha curcas]
2 Hb_000390_060 0.0443710319 - - PREDICTED: F-box/kelch-repeat protein At5g60570-like [Jatropha curcas]
3 Hb_000956_030 0.0498309611 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
4 Hb_000120_500 0.0581269546 - - PREDICTED: AT-hook motif nuclear-localized protein 10-like [Jatropha curcas]
5 Hb_004198_010 0.0593342178 - - Eukaryotic translation initiation factor 2 subunit beta [Theobroma cacao]
6 Hb_005883_050 0.0653549487 - - PREDICTED: transportin-3 [Jatropha curcas]
7 Hb_000316_030 0.0685742736 - - zinc finger protein, putative [Ricinus communis]
8 Hb_000230_330 0.0696615545 - - PREDICTED: calcium-binding protein 39-like [Populus euphratica]
9 Hb_000077_050 0.0703356286 - - PREDICTED: elongation factor G-1, mitochondrial isoform X1 [Jatropha curcas]
10 Hb_004881_050 0.073373747 - - PREDICTED: obg-like ATPase 1 [Jatropha curcas]
11 Hb_002097_090 0.074921089 - - Splicing factor 3A subunit, putative [Ricinus communis]
12 Hb_000076_080 0.0761828453 - - PREDICTED: protein MOS2 [Jatropha curcas]
13 Hb_000364_060 0.0769044274 - - JHL03K20.4 [Jatropha curcas]
14 Hb_002174_060 0.0772909988 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Jatropha curcas]
15 Hb_000307_200 0.0777504805 - - PREDICTED: uncharacterized protein LOC105638529 [Jatropha curcas]
16 Hb_004450_010 0.0782187914 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]
17 Hb_003602_040 0.0787843791 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
18 Hb_009118_010 0.0819323052 - - methionine aminopeptidase, putative [Ricinus communis]
19 Hb_000034_050 0.0824927557 - - PREDICTED: uncharacterized protein LOC105637912 [Jatropha curcas]
20 Hb_004195_280 0.0825698418 - - PREDICTED: CDK5RAP1-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_003434_060 Hb_003434_060 Hb_000390_060 Hb_000390_060 Hb_003434_060--Hb_000390_060 Hb_000956_030 Hb_000956_030 Hb_003434_060--Hb_000956_030 Hb_000120_500 Hb_000120_500 Hb_003434_060--Hb_000120_500 Hb_004198_010 Hb_004198_010 Hb_003434_060--Hb_004198_010 Hb_005883_050 Hb_005883_050 Hb_003434_060--Hb_005883_050 Hb_000316_030 Hb_000316_030 Hb_003434_060--Hb_000316_030 Hb_000230_330 Hb_000230_330 Hb_000390_060--Hb_000230_330 Hb_000390_060--Hb_000120_500 Hb_001584_110 Hb_001584_110 Hb_000390_060--Hb_001584_110 Hb_000034_050 Hb_000034_050 Hb_000390_060--Hb_000034_050 Hb_000390_060--Hb_000316_030 Hb_000956_030--Hb_004198_010 Hb_000956_030--Hb_000120_500 Hb_002097_090 Hb_002097_090 Hb_000956_030--Hb_002097_090 Hb_004450_010 Hb_004450_010 Hb_000956_030--Hb_004450_010 Hb_000236_370 Hb_000236_370 Hb_000956_030--Hb_000236_370 Hb_000120_500--Hb_005883_050 Hb_028639_060 Hb_028639_060 Hb_000120_500--Hb_028639_060 Hb_000120_500--Hb_004198_010 Hb_000364_060 Hb_000364_060 Hb_004198_010--Hb_000364_060 Hb_004198_010--Hb_004450_010 Hb_003044_100 Hb_003044_100 Hb_004198_010--Hb_003044_100 Hb_071736_010 Hb_071736_010 Hb_005883_050--Hb_071736_010 Hb_005883_050--Hb_000390_060 Hb_005754_060 Hb_005754_060 Hb_005883_050--Hb_005754_060 Hb_004447_060 Hb_004447_060 Hb_005883_050--Hb_004447_060 Hb_001040_160 Hb_001040_160 Hb_000316_030--Hb_001040_160 Hb_001609_010 Hb_001609_010 Hb_000316_030--Hb_001609_010 Hb_063047_010 Hb_063047_010 Hb_000316_030--Hb_063047_010 Hb_000316_030--Hb_002097_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.5752 4.82394 3.4065 5.6991 16.4098 24.7066
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.1973 7.7651 8.38217 6.8001 4.04867

CAGE analysis